Factsheet for VIT_14s0060g02160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71339	Canola	endoplasmic reticulum	31.68	79.69
KRH68514	Soybean	plastid	79.81	79.32
KRG96809	Soybean	plastid	80.12	78.9
Solyc01g099690.2.1	Tomato	plastid	77.95	76.99
Bra030756.1-P	Field mustard	plastid	75.47	75.23
CDY31112	Canola	plastid	75.47	75.23
CDY32150	Canola	plastid	75.16	74.46
GSMUA_Achr3P08150_001	Banana	plastid	76.09	72.7
CDX95009	Canola	plastid	66.46	69.71
AT1G09130.3	Thale cress	plastid	77.02	67.03
Os03t0344900-00	Rice	plastid	67.08	63.34
Zm00001d029121_P005	Maize	plastid	66.46	63.13
OQU92609	Sorghum	plastid	66.46	63.13
TraesCS4A01G139700.3	Wheat	plastid	65.22	62.31
TraesCS4B01G154900.3	Wheat	plastid	64.91	62.02
TraesCS4D01G167900.1	Wheat	golgi, plastid	64.91	62.02
HORVU4Hr1G046480.1	Barley	plastid	65.22	56.45
VIT_00s0204g00220.t01	Wine grape	plastid	32.3	35.62
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	15.22	30.82
VIT_01s0011g02100.t01	Wine grape	mitochondrion	22.05	29.46
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	14.91	28.4
VIT_03s0091g00700.t01	Wine grape	plastid	32.3	26.8
VIT_03s0063g02300.t01	Wine grape	plastid	22.36	26.77
VIT_12s0028g01250.t01	Wine grape	plastid	23.6	26.12
VIT_02s0025g05140.t01	Wine grape	plastid	21.12	23.37
VIT_07s0005g01530.t01	Wine grape	plastid	20.5	22.84
VIT_14s0006g01880.t01	Wine grape	plastid	21.12	21.25

Protein Annotations

EntrezGene:100249495	wikigene:100249495	MapMan:19.4.2.9.2	Gene3D:3.90.226.10	ProteinID:CBI39520	ProteinID:CBI39520.3
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	UniProt:D7U9V6	EMBL:FN596746	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	EntrezGene:LOC100249495	wikigene:LOC100249495	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381
PANTHER:PTHR10381:SF6	MEROPS:S14.003	SUPFAM:SSF52096	TIGR:TC54417	UniParc:UPI00015C94DA	ArrayExpress:VIT_14s0060g02160
EnsemblPlantsGene:VIT_14s0060g02160	EnsemblPlants:VIT_14s0060g02160.t01	unigene:Vvi.16614	RefSeq:XP_002279451	RefSeq:XP_002279451.1	RefSeq:XP_010659640.1
SEG:seg	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:D7U9V6]

Coordinates

chr14:-:1733737..1744753

Molecular Weight (calculated)

35395.3 Da

IEP (calculated)

8.587

GRAVY (calculated)

-0.144

Length

322 amino acids

Sequence
(BLAST)

001: MAASLQLPMA SSIPSSSSPS TTRPIFKTHC SMKPTCSAKI PMSPINPKDP FLSKLASVAA TSPERLLQRP SGSDSLPFLD LFDSPKLMAT PAQVERSVSY
101: NEHRPRRPPP DLPSLLLHGR IVYIGMPLVP AVTELVIAEL MYLQWMDPKE PVYVYINCTG TTRDDGERVG METEGFAIYD AMMQLKNEIH TVAVGAAIGQ
201: ACLLLAAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DTLVKLLAKH TGNSEETVST VMRRPYYMDS TKAKEFGVID KILWRGQEKI
301: MADVLSPEEW DKNAGIQVVD GI

Best Arabidopsis Sequence Match ( AT1G09130.1 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSVV

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.