Factsheet for VIT_02s0025g05140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12410.1	VIT_01s0026g02200.t01	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P08260_001	Banana	plastid	70.79	71.78
AT1G12410.1	Thale cress	plastid	67.7	70.61
CDY26563	Canola	plastid	67.35	70.5
Bra019764.1-P	Field mustard	plastid	67.35	70.25
PGSC0003DMT400010090	Potato	cytosol, plastid	69.42	69.9
CDX98066	Canola	plastid	67.01	69.89
Solyc08g079620.2.1	Tomato	plastid	69.07	69.55
CDY30078	Canola	plastid	66.32	69.18
KRH57313	Soybean	endoplasmic reticulum, extracellular	73.88	68.91
CDY68541	Canola	cytosol	29.21	68.0
KRH04045	Soybean	mitochondrion	72.16	61.22
KXG19238	Sorghum	plastid	60.48	60.27
Os06t0136800-01	Rice	plastid	61.17	59.93
TraesCS7D01G072100.1	Wheat	plastid	58.76	57.38
TraesCS7A01G076400.1	Wheat	plastid	58.76	57.0
CDY69283	Canola	plastid	39.52	54.76
Zm00001d045430_P002	Maize	plastid	60.82	54.63
HORVU7Hr1G017670.1	Barley	plastid	58.76	53.11
TraesCS4A01G374600.2	Wheat	plastid	57.39	52.85
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.7	50.38
CDY15997	Canola	plastid	68.04	40.57
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	17.18	31.45
VIT_01s0011g02100.t01	Wine grape	mitochondrion	25.77	31.12
VIT_07s0005g01530.t01	Wine grape	plastid	28.52	28.72
VIT_03s0063g02300.t01	Wine grape	plastid	26.46	28.62
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	16.49	28.4
VIT_14s0006g01880.t01	Wine grape	plastid	27.49	25.0
VIT_00s0204g00220.t01	Wine grape	plastid	24.74	24.66
VIT_12s0028g01250.t01	Wine grape	plastid	24.4	24.4
VIT_14s0060g02160.t01	Wine grape	plastid	23.37	21.12
VIT_03s0091g00700.t01	Wine grape	plastid	26.46	19.85

Protein Annotations

EntrezGene:100256891	wikigene:100256891	MapMan:19.4.2.8.1	Gene3D:3.90.226.10	UniProt:A5ADV7	EMBL:AM424107
ProteinID:CAN62361	ProteinID:CAN62361.1	ProteinID:CBI34817	ProteinID:CBI34817.3	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008236	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0016787
GO:GO:0019538	EntrezGene:LOC100256891	wikigene:LOC100256891	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127
PANTHER:PTHR10381	PANTHER:PTHR10381:SF15	MEROPS:S14.A01	SUPFAM:SSF52096	TIGR:TC55815	TIGR:TC66601
UniParc:UPI000151E714	ArrayExpress:VIT_02s0025g05140	EnsemblPlantsGene:VIT_02s0025g05140	EnsemblPlants:VIT_02s0025g05140.t01	unigene:Vvi.9843	RefSeq:XP_002266380
RefSeq:XP_002266380.1	SEG:seg	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A5ADV7]

Coordinates

chr2:-:4625091..4628481

Molecular Weight (calculated)

32383.9 Da

IEP (calculated)

10.366

GRAVY (calculated)

-0.402

Length

291 amino acids

Sequence
(BLAST)

001: MAVHLHSTPS SSSSLHSRTR VSQPPLSCAT KLFSGLKLQS ASTFGTGKPN LTVEFFNKVH KSVQSRTSDS KSTRARVRMM PIGTPRVPYR TPGEGTWQWV
101: DLWNALYRER VIYIGQHIDE EFSNQLLATM LYLDSIESSK RMFFYINSPG GDLTPSLAIY DTMQSLKSPV GTNCLGFAYN LATFLLAAGE KGNRLAMPLS
201: RIALQSPAGA ARGQADDIRN EANELLRIRD YLFSELANKT GQPIDKINKD LRRMKRFNAQ EALEYGLIDR ILRPPRVKAD APRKDAGTGL G

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.