Factsheet for Bra026972.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003986.1-P
Bra004407.1-P
Bra007875.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12410.1	Bra003986.1-P	AT1G69690.1	21798944
AT1G12410.1	Bra004407.1-P	AT1G69690.1	21798944
AT1G12410.1	Bra007875.1-P	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26563	Canola	plastid	67.52	94.96
Bra019764.1-P	Field mustard	plastid	67.01	93.91
AT1G12410.1	Thale cress	plastid	64.71	90.68
CDY68541	Canola	cytosol	27.37	85.6
VIT_02s0025g05140.t01	Wine grape	plastid	50.38	67.7
Solyc08g079620.2.1	Tomato	plastid	48.34	65.4
PGSC0003DMT400010090	Potato	cytosol, plastid	48.34	65.4
KRH57313	Soybean	endoplasmic reticulum, extracellular	50.9	63.78
GSMUA_Achr1P08260_001	Banana	plastid	45.52	62.02
KRH04045	Soybean	mitochondrion	51.92	59.18
KXG19238	Sorghum	plastid	42.2	56.51
Os06t0136800-01	Rice	plastid	41.69	54.88
TraesCS7D01G072100.1	Wheat	plastid	41.43	54.36
CDY15997	Canola	plastid	67.52	54.1
TraesCS7A01G076400.1	Wheat	plastid	41.43	54.0
HORVU7Hr1G017670.1	Barley	plastid	43.22	52.48
Zm00001d045430_P002	Maize	plastid	42.2	50.93
TraesCS4A01G374600.2	Wheat	plastid	40.66	50.32
Bra009331.1-P	Field mustard	mitochondrion	19.69	32.35
Bra013020.1-P	Field mustard	mitochondrion	17.9	29.79
Bra033332.1-P	Field mustard	plastid	21.48	28.57
Bra030504.1-P	Field mustard	plastid	21.74	28.43
Bra016816.1-P	Field mustard	plastid	17.9	25.93
Bra025079.1-P	Field mustard	plastid	18.93	25.69
Bra031777.1-P	Field mustard	plastid	17.65	25.27
Bra040108.1-P	Field mustard	plastid	17.9	22.95
Bra012683.1-P	Field mustard	plastid	17.9	22.8
Bra004177.1-P	Field mustard	plastid	17.65	22.04
Bra030756.1-P	Field mustard	plastid	17.14	20.74
Bra014229.1-P	Field mustard	plastid	18.67	18.81

Protein Annotations

MapMan:19.4.2.8.1	Gene3D:3.90.226.10	EnsemblPlantsGene:Bra026972	EnsemblPlants:Bra026972.1	EnsemblPlants:Bra026972.1-P	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Cornichon	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0006508	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0016787	GO:GO:0019538	UniProt:M4EDW2	HAMAP:MF_00444
PFAM:PF00574	PFAM:PF03311	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF15	SMART:SM01398
SUPFAM:SSF52096	TMHMM:TMhelix	UniParc:UPI000254288F	:	:	:

Description

AT1G12410 (E=1e-143) CLPR2, NCLPP2, CLP2 | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase

Coordinates

chrA09:-:34538505..34541635

Molecular Weight (calculated)

44641.9 Da

IEP (calculated)

8.235

GRAVY (calculated)

-0.213

Length

391 amino acids

Sequence
(BLAST)

001: MTRIKPEHRE TTEPEGSCLA LVSDQNLLVC LADLEFDYIN PYDSASRINS VVLPEFIVQG VLCVFYLITG HWFMALLCLP YLYYNFQLYS KRQHLVDVTE
101: IFNLLNWEKK KRLFKLAYII LNLFLTIFCC SIKLYSGLKP QSASFLTNGY QNLNKEFYGR IHKSLESGTG KANRSRVKMM PIGTPRVPYR NREEGTWQWV
201: DIWNALYRER VIFIGQNIDE EFSNQILATM LYLDTLDDSR RIYMYLNGPG GDLTPSLAIY DTMKSLKSPV GTHCVGLAYN LAGFLLAAGE KGQRFAMPLS
301: RIALTSPAGA ARGQADDIQN EAKELSRIRD YLFNELANNT GQPAERIFKD LSRVKRFNAE EAMEYGLIDK IVRPPRIKAD APRQDETSGL G

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.