CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99108
KRH45889

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12410.1	KRG99108	AT1G69690.1	21798944
AT1G12410.1	KRH45889	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57313	Soybean	endoplasmic reticulum, extracellular	84.26	92.63
VIT_02s0025g05140.t01	Wine grape	plastid	61.22	72.16
Bra019764.1-P	Field mustard	plastid	57.43	70.61
CDY26563	Canola	plastid	57.14	70.5
CDX98066	Canola	plastid	57.14	70.25
AT1G12410.1	Thale cress	plastid	57.14	70.25
GSMUA_Achr1P08260_001	Banana	plastid	58.6	70.03
CDY30078	Canola	plastid	56.85	69.89
CDY68541	Canola	cytosol	25.36	69.6
PGSC0003DMT400010090	Potato	cytosol, plastid	56.27	66.78
Solyc08g079620.2.1	Tomato	plastid	55.69	66.09
KXG19238	Sorghum	plastid	50.44	59.25
Os06t0136800-01	Rice	plastid	51.02	58.92
TraesCS7D01G072100.1	Wheat	plastid	50.44	58.05
TraesCS7A01G076400.1	Wheat	plastid	50.44	57.67
CDY69283	Canola	plastid	34.4	56.19
HORVU7Hr1G017670.1	Barley	plastid	52.19	55.59
Zm00001d045430_P002	Maize	plastid	50.73	53.7
TraesCS4A01G374600.2	Wheat	plastid	48.98	53.16
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	59.18	51.92
CDY15997	Canola	plastid	57.14	40.16
KRH24178	Soybean	mitochondrion	21.28	30.93
KRH29139	Soybean	mitochondrion, nucleus	20.99	30.25
KRH31786	Soybean	nucleus, plastid	25.66	29.04
KRH69210	Soybean	nucleus, plastid	25.95	28.62
KRH29491	Soybean	plastid	21.28	26.74
KRH24490	Soybean	plastid	20.99	26.37
KRH39679	Soybean	nucleus, plastid	22.45	25.16
KRH68271	Soybean	plastid	21.87	24.92
KRH76388	Soybean	nucleus, plastid	21.87	24.51
KRH57519	Soybean	plastid	21.57	24.34
KRH04225	Soybean	plastid	20.99	23.68
KRH01676	Soybean	plastid	21.87	23.29
KRH70450	Soybean	plastid	21.57	23.2
KRH68514	Soybean	plastid	19.24	20.37
KRG96809	Soybean	plastid	19.24	20.18
KRH35674	Soybean	plastid	21.28	19.62
KRG91103	Soybean	plastid	20.99	19.35

Protein Annotations

MapMan:19.4.2.8.1	Gene3D:3.90.226.10	UniProt:A0A0R0FC89	EMBL:ACUP02010375	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	EnsemblPlantsGene:GLYMA_17G136100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlants:KRH04045	ProteinID:KRH04045
ProteinID:KRH04045.1	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF15
SUPFAM:SSF52096	UniParc:UPI0006ED5094	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:10969418..10974388

Molecular Weight (calculated)

38557.5 Da

IEP (calculated)

10.078

GRAVY (calculated)

-0.265

Length

343 amino acids

Sequence
(BLAST)

001: MFIYLKKYTR TSIKLRRRRI ETALWLMFLH SSSFLLQSNS SDFGFFVPYP LSLIHFLNMA VAPYTTGSAP RFSPPPTSSV ATKLYSGLKL QAASSFRAAR
101: PNVTAEFYGK VHNTLHCRYA NHNPSMARIR MMPIGTPKVP YRTPGEGTWQ WVDVWNALYR ERVIFIGQEI DEEFSNQILA TMLYLDSIDN SKKLYMYING
201: PGGDLTPSMA IYDTMQSLQS PVATHCVGYA YSLAAFLLAA GEKSNRSAMP LSRVALTSPA GAARGQADDI QNEANELLRI RDYLFNELSK KTGQPLEKIT
301: KDLSRMKRFN AQEALEYGLI DRIVRPPRIK ADAPRKEAGT GLG

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.