CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01754
CDY28576
CDY28577
CDY68276

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12410.1	CDY01754	AT1G69690.1	21798944
AT1G12410.1	CDY28576	AT1G69690.1	21798944
AT1G12410.1	CDY28577	AT1G69690.1	21798944
AT1G12410.1	CDY68276	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26563	Canola	plastid	55.74	97.84
CDX98066	Canola	plastid	54.92	96.06
CDY30078	Canola	plastid	54.3	94.98
AT1G12410.1	Thale cress	plastid	54.1	94.62
CDY68541	Canola	cytosol	21.11	82.4
VIT_02s0025g05140.t01	Wine grape	plastid	40.57	68.04
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.1	67.52
Solyc08g079620.2.1	Tomato	plastid	38.93	65.74
PGSC0003DMT400010090	Potato	cytosol, plastid	38.93	65.74
GSMUA_Achr1P08260_001	Banana	plastid	37.5	63.76
CDY69283	Canola	plastid	27.25	63.33
KRH57313	Soybean	endoplasmic reticulum, extracellular	40.37	63.14
KRH04045	Soybean	mitochondrion	40.16	57.14
KXG19238	Sorghum	plastid	34.02	56.85
Os06t0136800-01	Rice	plastid	33.81	55.56
TraesCS7D01G072100.1	Wheat	plastid	33.4	54.7
TraesCS7A01G076400.1	Wheat	plastid	33.4	54.33
HORVU7Hr1G017670.1	Barley	plastid	33.61	50.93
Zm00001d045430_P002	Maize	plastid	33.81	50.93
TraesCS4A01G374600.2	Wheat	plastid	32.58	50.32
CDX69964	Canola	plastid	11.27	36.67
CDY71709	Canola	endoplasmic reticulum, extracellular	13.11	33.51
CDY21523	Canola	mitochondrion	16.19	33.19
CDY61915	Canola	mitochondrion	15.78	32.63
CDY51306	Canola	plastid	17.42	30.69
CDY02210	Canola	mitochondrion	14.55	30.21
CDX89962	Canola	plastid	18.03	29.93
CDY15433	Canola	plastid	18.03	28.95
CDY71339	Canola	endoplasmic reticulum	7.58	28.91
CDY15250	Canola	plastid	18.03	28.76
CDY34832	Canola	plastid	15.16	27.11
CDY31211	Canola	plastid	14.96	27.04
CDY21009	Canola	plastid	14.96	27.04
CDY39425	Canola	plastid	15.57	26.39
CDY38981	Canola	plastid	15.57	26.12
CDY34630	Canola	plastid	8.81	24.16
CDY42955	Canola	plastid	14.75	23.61
CDY35605	Canola	plastid	14.55	23.43
CDY09652	Canola	plastid	14.55	23.36
CDY09656	Canola	plastid	14.55	23.2
CDX90492	Canola	plastid	14.55	23.13
CDX96137	Canola	plastid	14.34	22.36
CDY36212	Canola	plastid	14.14	22.04
CDY31112	Canola	plastid	14.14	21.36
CDY43468	Canola	plastid	7.58	21.02
CDY32150	Canola	plastid	13.93	20.92
CDX95009	Canola	plastid	13.11	20.85
CDY59367	Canola	plastid	15.37	19.33
CDY03582	Canola	plastid	15.16	19.02
CDY46278	Canola	cytosol	8.2	17.7

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.4.2.8.1	Gene3D:3.90.226.10	GO:A0A078FT17	UniProt:A0A078FT17	EnsemblPlants:CDY15997
ProteinID:CDY15997	ProteinID:CDY15997.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00090383001	InterPro:IPR002885	InterPro:IPR011990
HAMAP:MF_00444	PFAM:PF00574	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PRINTS:PR00127
PFscan:PS51375	PANTHER:PTHR10381	PANTHER:PTHR10381:SF15	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF52096	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDC3FC	SEG:seg	:	:

Description

BnaC08g41260DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078FT17]

Coordinates

chrLK032060:+:149657..152416

Molecular Weight (calculated)

54507.9 Da

IEP (calculated)

7.587

GRAVY (calculated)

-0.204

Length

488 amino acids

Sequence
(BLAST)

001: MAVSFNTTLH QCSLSSSCSI KLYSGLKPQS ASFLANGYQN LNKEFYGRIH KSLESGGTGK ASRSRVKMMP IGTPRVPYRN REEGTWQWVD IWNALYRERV
101: IFIGQNIDEE FSNQILATML YLDTLDDSRR IYMYLNGPGG DLTPSLAIYD TMKSLKSPVG THCVGLAYNL AGFLLAAGEK GQRFAMPLSR IALTSPAGAA
201: RGQADDIQNE AKELSRIRDY LFNELANNTG QPAERIFKDL SRVKRFNAEE AMEYGLIDKI VRPPRIKADA PRQDETSVKP NVVTFSALID SFVKEGKLSE
301: AKELCNEMIK RGIEPNTITY NSLIYGLCNE KRLDEANLMV SKGCDPSIVT FNIIINEYCK AKLVDEGMRL FRKMSLRGVV ASTVTYNTLI QGFCQSGKLN
401: VAKELFQEMV SQGAHPDIVT YGILMDGLCD NGEVEEALEI LEKMHKCKID PGIGIYTIIL HGMCIASKVD DAWDLFCSLP LKEVKRII

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.