Factsheet for Solyc08g079620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g007420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12410.1	Solyc05g007420.1.1	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010090	Potato	cytosol, plastid	94.81	94.81
VIT_02s0025g05140.t01	Wine grape	plastid	69.55	69.07
AT1G12410.1	Thale cress	plastid	66.44	68.82
CDX98066	Canola	plastid	66.09	68.46
CDY26563	Canola	plastid	65.74	68.35
Bra019764.1-P	Field mustard	plastid	65.74	68.1
CDY30078	Canola	plastid	65.05	67.38
CDY68541	Canola	cytosol	29.07	67.2
GSMUA_Achr1P08260_001	Banana	plastid	62.98	63.41
KRH57313	Soybean	endoplasmic reticulum, extracellular	66.09	61.22
KXG19238	Sorghum	plastid	60.21	59.59
Os06t0136800-01	Rice	plastid	59.17	57.58
TraesCS7D01G072100.1	Wheat	plastid	57.79	56.04
KRH04045	Soybean	mitochondrion	66.09	55.69
TraesCS7A01G076400.1	Wheat	plastid	57.79	55.67
CDY69283	Canola	plastid	39.1	53.81
Zm00001d045430_P002	Maize	plastid	60.21	53.7
TraesCS4A01G374600.2	Wheat	plastid	56.75	51.9
HORVU7Hr1G017670.1	Barley	plastid	57.79	51.86
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.4	48.34
Solyc01g007490.2.1	Tomato	plastid	28.72	40.29
CDY15997	Canola	plastid	65.74	38.93
Solyc04g009310.2.1	Tomato	plastid	24.22	29.66
Solyc01g100520.2.1	Tomato	plastid	28.03	27.09
Solyc10g051310.1.1	Tomato	plastid	24.91	26.18
Solyc09g065790.1.1	Tomato	cytosol	15.92	26.14
Solyc08g075750.2.1	Tomato	plastid	26.64	25.5
Solyc02g091280.2.1	Tomato	plastid	26.99	25.24
Solyc08g077890.2.1	Tomato	plastid	24.22	23.18
Solyc01g099690.2.1	Tomato	plastid	22.15	19.63
Solyc10g049710.1.1	Tomato	plastid	23.88	17.97

Protein Annotations

MapMan:19.4.2.8.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	UniProt:K4CNW2	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381
PANTHER:PTHR10381:SF15	MEROPS:S14.001	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc08g079620.2	EnsemblPlants:Solyc08g079620.2.1	UniParc:UPI000276B2FA
SEG:seg	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G12410) UniProtKB/Swiss-Prot;Acc:Q9XJ36]

Coordinates

chr8:+:63103439..63108214

Molecular Weight (calculated)

31811.2 Da

IEP (calculated)

9.536

GRAVY (calculated)

-0.268

Length

289 amino acids

Sequence
(BLAST)

001: MAVALPTSSS SYLHSKTKIP KSSLSCSSKV YVGLRIQSPG SYGVATSNSN VDFFNRVHKS IKSGTKDGKA TRAQVTMMPI GTPKVPYRNP VDASWQWVDI
101: WNALYRERVI FIGEEITEEF SNQILATMLY LDSIDNSKKL YMFINGPGGD LTPTLAIYDT MQSLKSAVGT HCVGFAYNLA AFLLAAGEKG NRCAMPLARI
201: ALESPAGAAR GQADDIRNEA EELLRIRNYL FKELSEKTGQ PIEKVHKDLS RVKRFTAKEA LEYGLIDRIV RPNRLDGDAP PRDITAGLG

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.