Factsheet for Solyc09g065790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g100520.2.1
Solyc02g091280.2.1
Solyc03g007110.2.1
Solyc08g075750.2.1
Solyc08g077890.2.1
Solyc08g079620.2.1
Solyc08g079660.2.1
Solyc10g049710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00670.1	Solyc01g100520.2.1	AT1G02560.1	14593120
ATCG00670.1	Solyc08g079620.2.1	AT1G12410.1	14593120
ATCG00670.1	Solyc10g049710.1.1	AT1G49970.1	14593120
ATCG00670.1	Solyc02g091280.2.1	AT1G66670.1	14593120
ATCG00670.1	Solyc08g079660.2.1	AT4G12060.1	14593120
ATCG00670.1	Solyc08g077890.2.1	AT4G17040.1	14593120
ATCG00670.1	Solyc03g007110.2.1	AT4G25370.1	14593120
ATCG00670.1	Solyc08g075750.2.1	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G111400.1	Wheat	cytosol	32.39	50.0
Solyc01g007490.2.1	Tomato	plastid	53.41	45.63
HORVU3Hr1G044750.2	Barley	cytosol	34.66	44.2
ATCG00670.1	Thale cress	cytosol	44.89	40.31
HORVU0Hr1G027550.1	Barley	cytosol	38.07	31.02
TraesCS1D01G435100.1	Wheat	cytosol	38.07	31.02
HORVU5Hr1G065060.1	Barley	cytosol	38.07	31.02
HORVU7Hr1G065830.1	Barley	cytosol	38.07	31.02
GRMZM5G804708_P01	Maize	plastid	37.5	30.56
TraesCS3D01G053300.1	Wheat	cytosol	37.5	30.56
TraesCS2D01G271200.1	Wheat	cytosol	34.09	30.3
HORVU6Hr1G049380.1	Barley	cytosol, peroxisome, plastid	36.93	30.09
TraesCS3B01G187300.1	Wheat	cytosol	36.93	30.09
CAA33972	Rice	cytosol	36.93	30.09
HORVU0Hr1G026150.1	Barley	cytosol, peroxisome, plastid	36.93	30.09
HORVU6Hr1G037220.1	Barley	cytosol, peroxisome, plastid	36.93	30.09
HORVU6Hr1G023010.1	Barley	cytosol, peroxisome, plastid	36.93	30.09
AGP50779	Barley	cytosol, peroxisome, plastid	36.93	30.09
HORVU0Hr1G037900.1	Barley	cytosol, peroxisome, plastid	36.93	30.09
HORVU0Hr1G036940.1	Barley	cytosol, peroxisome, plastid	36.93	30.09
HORVU0Hr1G029900.1	Barley	cytosol, peroxisome, plastid	36.93	30.09
TraesCS5D01G009400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	33.52	29.35
TraesCS1D01G182500.1	Wheat	cytosol, peroxisome, plastid	26.7	25.97
TraesCSU01G266900.1	Wheat	cytosol	26.7	25.97
HORVU3Hr1G053800.1	Barley	endoplasmic reticulum	17.05	21.58
Solyc04g009310.2.1	Tomato	plastid	26.7	19.92
TraesCS3A01G215600.1	Wheat	cytosol	19.89	19.02
Solyc08g079620.2.1	Tomato	plastid	26.14	15.92
Solyc08g075750.2.1	Tomato	plastid	27.27	15.89
Solyc02g091280.2.1	Tomato	plastid	26.14	14.89
Solyc10g051310.1.1	Tomato	plastid	22.16	14.18
Solyc01g100520.2.1	Tomato	plastid	23.86	14.05
Solyc08g077890.2.1	Tomato	plastid	19.89	11.59
Solyc01g099690.2.1	Tomato	plastid	18.18	9.82
Solyc10g049710.1.1	Tomato	plastid	13.64	6.25

Protein Annotations

EnsemblPlants:Solyc09g065790.1.1	EnsemblPlantsGene:Solyc09g065790.1	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	PANTHER:PTHR10381	PANTHER:PTHR10381:SF19	PFAM:PF00574	PRINTS:PR00127
SUPFAM:SSF52096	UniParc:UPI000276C935	UniProt:K4CUK5	MapMan:35.1	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:K4CUK5]

Coordinates

chr9:-:64061782..64062312

Molecular Weight (calculated)

20025.7 Da

IEP (calculated)

9.114

GRAVY (calculated)

0.072

Length

176 amino acids

Sequence
(BLAST)

001: MKKKKRTGIS TLIHNFFEPY TSKGACTVPK GYNFTLFNRL YRERLFFLGQ GIGTELSNQL IDLMLYLSME DENKDLYLFV NSPGGWVIPG IAIYDTMQFV
101: RPDIHTMCLR LAASMGSFTL AGGQLTKRMI MSTPNFNIPH FYPHNVELSI CIPTKGATVP PDTHILRVYS ICLIYI

Best Arabidopsis Sequence Match ( ATCG00670.1 )
(BLAST)

001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ

Arabidopsis Description

CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.