Factsheet for Solyc03g007110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	45.11	76.26
VIT_16s0022g01840.t01	Wine grape	plastid	58.72	60.53
GSMUA_Achr5P18820_001	Banana	plastid	54.04	56.44
KRH09224	Soybean	nucleus, plastid	58.72	53.08
KRH38715	Soybean	plastid	43.83	52.55
KRH38717	Soybean	nucleus, plastid	55.74	51.98
KRH09223	Soybean	plastid	55.32	51.59
CDX92700	Canola	plastid	48.94	49.57
OQU92918	Sorghum	plastid	48.09	49.13
Bra019170.1-P	Field mustard	plastid	48.51	48.51
CDY49708	Canola	plastid	48.51	48.51
AT4G25370.1	Thale cress	plastid	48.09	47.48
TraesCS4B01G224500.1	Wheat	plastid	45.53	46.72
TraesCS4D01G225100.1	Wheat	plastid	45.53	46.72
Os03t0247000-01	Rice	plastid	45.96	46.55
TraesCS4A01G079500.1	Wheat	plastid	45.11	46.29
Zm00001d028414_P002	Maize	plastid	47.23	45.31
HORVU4Hr1G063150.3	Barley	plastid	45.53	42.46
CDX94453	Canola	plastid	22.55	40.77
Solyc08g079660.2.1	Tomato	plastid	41.28	40.59
CDY57285	Canola	plastid	34.47	39.71
Zm00001d047920_P003	Maize	plastid	46.38	37.85

Protein Annotations

Gene3D:1.10.1780.10	MapMan:19.4.2.9.3	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009941	GO:GO:0019538	InterPro:IPR036628
UniProt:K4BED4	PFAM:PF02861	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124	SUPFAM:SSF81923	EnsemblPlantsGene:Solyc03g007110.2
EnsemblPlants:Solyc03g007110.2.1	UniParc:UPI0002767F61	:	:	:	:

Description

ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G25370) UniProtKB/Swiss-Prot;Acc:Q93WL3]

Coordinates

chr3:-:1704206..1709141

Molecular Weight (calculated)

26013.3 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.321

Length

235 amino acids

Sequence
(BLAST)

001: MATHSFSLLP IQSLTSNSSN KQSENTNTFL THKYCKALAT SFTGGKLLIR PQNLNSVTPK RRRSTVATVA FSLPITKPEG YEKQPKWSSR AIQAFVMAEL
101: EARKIKYPST GTEALLMGIL VEGTSLAAKF LRANGITFFK VSEETLKLLG KSDMYYSNPE SPPLTKPARK ALDWAVNEKL KSGEDGEITV THIVLGIWSV
201: KESAGHIIMS TLGFDDEKAK ELAKFMDKDS ELTYK

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.