Factsheet for AT4G25370.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92700	Canola	plastid	78.15	80.17
Bra019170.1-P	Field mustard	plastid	77.73	78.72
CDY49708	Canola	plastid	77.73	78.72
CDY57285	Canola	plastid	60.92	71.08
GSMUA_Achr11P...	Banana	cytosol	39.92	68.35
VIT_16s0022g01840.t01	Wine grape	plastid	52.94	55.26
CDX94453	Canola	plastid	28.99	53.08
KRH38715	Soybean	plastid	43.7	53.06
KRH38717	Soybean	nucleus, plastid	55.46	52.38
GSMUA_Achr5P18820_001	Banana	plastid	47.9	50.67
KRH09224	Soybean	nucleus, plastid	54.62	50.0
Solyc03g007110.2.1	Tomato	plastid	47.48	48.09
KRH09223	Soybean	plastid	50.42	47.62
OQU92918	Sorghum	plastid	45.8	47.39
AT4G12060.1	Thale cress	plastid	44.96	44.4
Os03t0247000-01	Rice	plastid	42.86	43.97
TraesCS4B01G224500.1	Wheat	plastid	40.76	42.36
TraesCS4D01G225100.1	Wheat	plastid	40.76	42.36
TraesCS4A01G079500.1	Wheat	plastid	40.34	41.92
Zm00001d028414_P002	Maize	plastid	42.02	40.82
HORVU4Hr1G063150.3	Barley	plastid	40.76	38.49
Zm00001d047920_P003	Maize	plastid	44.12	36.46

Protein Annotations

Gene3D:1.10.1780.10	MapMan:19.4.2.9.3	PDB:4Y0B	EntrezGene:828640	ProteinID:AEE85048.1	ArrayExpress:AT4G25370
EnsemblPlantsGene:AT4G25370	RefSeq:AT4G25370	TAIR:AT4G25370	RefSeq:AT4G25370-TAIR-G	EnsemblPlants:AT4G25370.1	TAIR:AT4G25370.1
EMBL:AY035135	EMBL:AY059070	EMBL:AY086824	Unigene:At.21146	ProteinID:CAB45514.1	ProteinID:CAB81348.1
InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009941	GO:GO:0019538
InterPro:IPR036628	RefSeq:NP_567718.1	PFAM:PF02861	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124	UniProt:Q93WL3
SUPFAM:SSF81923	UniParc:UPI00000AB2D9	SEG:seg	:	:	:

Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]

Coordinates

chr4:+:12972685..12974963

Molecular Weight (calculated)

26051.4 Da

IEP (calculated)

9.783

GRAVY (calculated)

-0.274

Length

238 amino acids

Sequence
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.