CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92371
EER94414
EES00561
EES00782
EES20050
KXG19238
OQU92918

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	EER92371	AT1G02560.1	14593120
AT4G12060.1	KXG19238	AT1G12410.1	14593120
AT4G12060.1	EES20050	AT1G49970.1	14593120
AT4G12060.1	EES00782	AT1G66670.1	14593120
AT4G12060.1	EES00561	AT4G17040.1	14593120
AT4G12060.1	OQU92918	AT4G25370.1	14593120
AT4G12060.1	EER94414	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028414_P002	Maize	plastid	90.0	84.49
Os03t0247000-01	Rice	plastid	83.91	83.19
TraesCS4D01G225100.1	Wheat	plastid	80.87	81.22
TraesCS4B01G224500.1	Wheat	plastid	80.43	80.79
TraesCS4A01G079500.1	Wheat	plastid	80.0	80.35
HORVU4Hr1G063150.3	Barley	plastid	80.87	73.81
GSMUA_Achr11P...	Banana	cytosol	43.91	72.66
Zm00001d047920_P003	Maize	plastid	86.52	69.1
GSMUA_Achr5P18820_001	Banana	plastid	54.35	55.56
VIT_16s0022g01840.t01	Wine grape	plastid	50.43	50.88
Solyc03g007110.2.1	Tomato	plastid	49.13	48.09
Bra019170.1-P	Field mustard	plastid	48.7	47.66
CDY49708	Canola	plastid	48.7	47.66
CDX92700	Canola	plastid	47.39	46.98
AT4G25370.1	Thale cress	plastid	47.39	45.8
CDX94486	Canola	plastid	47.39	44.67
Bra029436.1-P	Field mustard	plastid	47.39	44.67
KRH38717	Soybean	nucleus, plastid	48.7	44.44
CDX86723	Canola	plastid	46.96	44.26
KRH09223	Soybean	plastid	47.83	43.65
KRH38715	Soybean	plastid	36.96	43.37
AT4G12060.1	Thale cress	plastid	45.22	43.15
KRH09224	Soybean	nucleus, plastid	47.39	41.92
Solyc08g079660.2.1	Tomato	plastid	42.17	40.59
CDX94453	Canola	plastid	22.17	39.23
KRH77428	Soybean	endoplasmic reticulum, golgi	43.04	38.82
CDY57285	Canola	plastid	31.3	35.29
PGSC0003DMT400010010	Potato	plastid	42.61	30.82

Protein Annotations

EnsemblPlants:OQU92918	EnsemblPlantsGene:SORBI_3001G437200	EntrezGene:8078852	Gene3D:1.10.1780.10	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
PFAM:PF02861	ProteinID:EER92556.1	ProteinID:OQU92918	ProteinID:OQU92918.1	RefSeq:XP_002465558.1	SEG:seg
SUPFAM:SSF81923	unigene:Sbi.12134	UniParc:UPI0001A826C8	UniProt:C5WQY5	MapMan:19.4.2.9.3	:

Description

hypothetical protein

Coordinates

chr1:+:71551820..71558193

Molecular Weight (calculated)

24434.2 Da

IEP (calculated)

10.095

GRAVY (calculated)

-0.158

Length

230 amino acids

Sequence
(BLAST)

001: MATAAQVAAT FLSFLSSSSS STHHPAPSSS VSLVTNPVLP VSLRAAGPRL ASRLRGRRVG AAVAQLPTAH PEVASGEKKI RWSSRAVRSF AMAELEARKM
101: RYPTTGTEGL LMGILVEGTS GAAKLLRANG TTLLKVRDEA ANVLGKSEMF YFSPMHPPLT EAAQRALDWA VNEKLKSGED GEVTANHLLL GIWSDKESAG
201: HKILESLGFD DEKASLLAKT ANEEAAMSPR

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.