CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91103
KRH01676
KRH04045
KRH04225
KRH09223
KRH09224
KRH31786
KRH35674
KRH38715
KRH38717
KRH39679
KRH57313
KRH57519
KRH68271
KRH69210
KRH70450
KRH76388

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	KRH31786	AT1G02560.1	14593120
AT4G12060.1	KRH68271	AT1G02560.1	14593120
AT4G12060.1	KRH69210	AT1G02560.1	14593120
AT4G12060.1	KRH04045	AT1G12410.1	14593120
AT4G12060.1	KRH57313	AT1G12410.1	14593120
AT4G12060.1	KRG91103	AT1G49970.1	14593120
AT4G12060.1	KRH35674	AT1G49970.1	14593120
AT4G12060.1	KRH01676	AT1G66670.1	14593120
AT4G12060.1	KRH70450	AT1G66670.1	14593120
AT4G12060.1	KRH04225	AT4G17040.1	14593120
AT4G12060.1	KRH57519	AT4G17040.1	14593120
AT4G12060.1	KRH09223	AT4G25370.1	14593120
AT4G12060.1	KRH09224	AT4G25370.1	14593120
AT4G12060.1	KRH38715	AT4G25370.1	14593120
AT4G12060.1	KRH38717	AT4G25370.1	14593120
AT4G12060.1	KRH39679	AT5G45390.1	14593120
AT4G12060.1	KRH76388	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	37.25	68.35
GSMUA_Achr5P18820_001	Banana	plastid	46.27	52.44
CDX86723	Canola	plastid	48.63	50.82
Bra029436.1-P	Field mustard	plastid	48.24	50.41
CDX94486	Canola	plastid	48.24	50.41
AT4G12060.1	Thale cress	plastid	47.06	49.79
Solyc08g079660.2.1	Tomato	plastid	45.88	48.95
KRH38715	Soybean	plastid	37.25	48.47
KRH09223	Soybean	plastid	47.06	47.62
KRH38717	Soybean	nucleus, plastid	46.27	46.83
KRH09224	Soybean	nucleus, plastid	47.06	46.15
Os03t0247000-01	Rice	plastid	39.61	43.53
OQU92918	Sorghum	plastid	38.82	43.04
TraesCS4A01G079500.1	Wheat	plastid	38.04	42.36
TraesCS4D01G225100.1	Wheat	plastid	38.04	42.36
TraesCS4B01G224500.1	Wheat	plastid	37.65	41.92
HORVU4Hr1G063150.3	Barley	plastid	38.82	39.29
Zm00001d028414_P002	Maize	plastid	37.25	38.78
PGSC0003DMT400010010	Potato	plastid	46.67	37.42
Zm00001d047920_P003	Maize	plastid	38.43	34.03

Protein Annotations

Gene3D:1.10.1780.10	MapMan:19.4.2.9.3	EMBL:ACUP02000672	InterPro:Clp_N	InterPro:Clp_N_dom_sf	EnsemblPlantsGene:GLYMA_01G212900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536
GO:GO:0009570	GO:GO:0009941	GO:GO:0019538	GO:GO:0043424	InterPro:IPR036628	UniProt:K7K532
EnsemblPlants:KRH77428	ProteinID:KRH77428	ProteinID:KRH77428.1	PFAM:PF02861	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
SUPFAM:SSF81923	UniParc:UPI0002958DC9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54422761..54426488

Molecular Weight (calculated)

28198.2 Da

IEP (calculated)

9.982

GRAVY (calculated)

-0.029

Length

255 amino acids

Sequence
(BLAST)

001: MFLPLKTSLF SSKLALIFVV KWLFRAAIAP RVWYSAPTDS SVRLGQTLTL KSFENSWIGT KVGVSPCSLN LRPVVSVSRR RPLAATVSFS LPTAKPERAS
101: TGQEIPKWFS KAIKSFAMSE LEARKLKYLT TGTEALLMGV LIESTNLTAK FLRAHGITIL KVRDETVKLL GKADLFFFSP EHPPLTDEAQ RALDWAVDQK
201: IKYGDGGEIT TSHILLGIWS EVDSPGHKIL FTLGFNDEKA KELEPSISKP GCTDD

Best Arabidopsis Sequence Match ( AT4G12060.1 )
(BLAST)

001: MAAHSSCNFA LTNPIISQID SFSKKKLSVP LYFFSTRKAL TNPWLGVVDS SLSLTSPVSA LQTNRPRRIH KSAISSLPTA NPDLVVSDAK KPKWSWRAIK
101: SFAMGELEAR KLKYPNTGTE ALLMGILIEG TSFTSKFLRA NKIMLYKVRE ETVKLLGKAD MYFFSPEHPP LTEDAQRALD SALDQNLKAG GIGEVMPAHI
201: LLGIWSEVES PGHKILATLG FTDEKSKELE SFASESGFLD E

Arabidopsis Description

CLPT2ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GW78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.