Factsheet for Zm00001d028414_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G804708_P01
Zm00001d009339_P001
Zm00001d028414_P002
Zm00001d028895_P001
Zm00001d030149_P001
Zm00001d039167_P001
Zm00001d040322_P002
Zm00001d045430_P002
Zm00001d047634_P002
Zm00001d047920_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	Zm00001d028895_P001	AT1G02560.1	14593120
AT4G12060.1	Zm00001d047634_P002	AT1G02560.1	14593120
AT4G12060.1	Zm00001d045430_P002	AT1G12410.1	14593120
AT4G12060.1	Zm00001d039167_P001	AT1G49970.1	14593120
AT4G12060.1	Zm00001d009339_P001	AT1G66670.1	14593120
AT4G12060.1	Zm00001d040322_P002	AT4G17040.1	14593120
AT4G12060.1	Zm00001d028414_P002	AT4G25370.1	14593120
AT4G12060.1	Zm00001d047920_P003	AT4G25370.1	14593120
AT4G12060.1	Zm00001d030149_P001	AT5G45390.1	14593120
AT4G12060.1	GRMZM5G804708_P01	ATCG00670.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92918	Sorghum	plastid	84.49	90.0
Os03t0247000-01	Rice	plastid	77.96	82.33
TraesCS4D01G225100.1	Wheat	plastid	73.47	78.6
TraesCS4A01G079500.1	Wheat	plastid	72.65	77.73
TraesCS4B01G224500.1	Wheat	plastid	72.65	77.73
GSMUA_Achr11P...	Banana	cytosol	41.63	73.38
HORVU4Hr1G063150.3	Barley	plastid	73.47	71.43
Zm00001d047920_P003	Maize	plastid	77.14	65.62
GSMUA_Achr5P18820_001	Banana	plastid	49.8	54.22
VIT_16s0022g01840.t01	Wine grape	plastid	47.35	50.88
Solyc03g007110.2.1	Tomato	plastid	45.31	47.23
CDY49708	Canola	plastid	42.86	44.68
Bra019170.1-P	Field mustard	plastid	42.86	44.68
Bra029436.1-P	Field mustard	plastid	44.08	44.26
CDX92700	Canola	plastid	41.63	43.97
CDX86723	Canola	plastid	43.67	43.85
KRH09223	Soybean	plastid	44.9	43.65
KRH38717	Soybean	nucleus, plastid	44.9	43.65
KRH38715	Soybean	plastid	34.69	43.37
AT4G12060.1	Thale cress	plastid	42.45	43.15
KRH09224	Soybean	nucleus, plastid	45.31	42.69
CDX94486	Canola	plastid	42.04	42.21
AT4G25370.1	Thale cress	plastid	40.82	42.02
Solyc08g079660.2.1	Tomato	plastid	37.55	38.49
CDX94453	Canola	plastid	20.41	38.46
KRH77428	Soybean	endoplasmic reticulum, golgi	38.78	37.25
CDY57285	Canola	plastid	27.35	32.84
PGSC0003DMT400010010	Potato	plastid	37.96	29.25

Protein Annotations

Gene3D:1.10.1780.10	EntrezGene:100281862	MapMan:19.4.2.9.3	UniProt:A0A1D6JW03	InterPro:Clp_N	InterPro:Clp_N_dom_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016787	GO:GO:0019538	InterPro:IPR036628
ProteinID:ONL95953.1	PFAM:PF02861	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124	SUPFAM:SSF81923	UniParc:UPI000842EB0E
EnsemblPlantsGene:Zm00001d028414	EnsemblPlants:Zm00001d028414_P002	EnsemblPlants:Zm00001d028414_T002	SEG:seg	:	:

Description

ATP-dependent Clp protease ATP-binding subunit CLPT1 chloroplastic

Coordinates

chr1:-:34138159..34143845

Molecular Weight (calculated)

26421.8 Da

IEP (calculated)

9.130

GRAVY (calculated)

0.007

Length

245 amino acids

Sequence
(BLAST)

001: MATAAHQVAA TFLSFLSSST HHLAPSSVSL GTTSVLPVSL RAAGTRGPRL AYRLRGRRVG AAVAQLPTTH PEVVSGEKKI RWSSRAVRSF AMAELEARKM
101: RYPTTGTEGL LMGILVEGTS GAAKLLRANG ITLLKVREEA ANVLGKSEMF YFSPMHPPLT EAAQRALDWA VNEKLKSGNF FLVICSFFFE CLGEDGEVNA
201: NHLLLGIWSD DESAGHKILY SLGFDDVKAS LLAKTADEEA AMSPR

Best Arabidopsis Sequence Match ( AT4G12060.1 )
(BLAST)

001: MAAHSSCNFA LTNPIISQID SFSKKKLSVP LYFFSTRKAL TNPWLGVVDS SLSLTSPVSA LQTNRPRRIH KSAISSLPTA NPDLVVSDAK KPKWSWRAIK
101: SFAMGELEAR KLKYPNTGTE ALLMGILIEG TSFTSKFLRA NKIMLYKVRE ETVKLLGKAD MYFFSPEHPP LTEDAQRALD SALDQNLKAG GIGEVMPAHI
201: LLGIWSEVES PGHKILATLG FTDEKSKELE SFASESGFLD E

Arabidopsis Description

CLPT2ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GW78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.