Factsheet for Zm00001d009339_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00782	Sorghum	plastid	90.97	90.1
Os01t0507900-01	Rice	plastid	81.94	80.89
GSMUA_Achr4P06560_001	Banana	cytosol, plastid, vacuole	17.74	80.88
HORVU3Hr1G044530.1	Barley	plastid	77.74	79.02
TraesCS3B01G229600.1	Wheat	plastid	77.74	78.5
TraesCS3A01G197900.1	Wheat	plastid	77.74	78.5
HORVU3Hr1G044510.1	Barley	extracellular	19.68	70.11
KRH70450	Soybean	plastid	59.03	57.37
VIT_14s0006g01880.t01	Wine grape	plastid	58.71	56.88
KRH01676	Soybean	plastid	58.39	56.21
Solyc02g091280.2.1	Tomato	plastid	55.81	55.99
AT1G66670.1	Thale cress	plastid	55.16	55.34
Bra004177.1-P	Field mustard	plastid	54.84	54.31
CDX96137	Canola	plastid	54.84	54.31
CDY36212	Canola	plastid	54.52	53.99
PGSC0003DMT400078756	Potato	plastid	54.19	53.5
Zm00001d047634_P002	Maize	cytosol	33.55	44.07
Zm00001d028895_P001	Maize	plastid	34.19	33.87
Zm00001d002969_P001	Maize	mitochondrion	28.06	33.59
Zm00001d025891_P001	Maize	mitochondrion	28.06	33.46
GRMZM5G804708_P01	Maize	plastid	22.58	32.41
Zm00001d030149_P001	Maize	mitochondrion	31.29	30.5
Zm00001d017330_P001	Maize	plastid	26.77	29.43
Zm00001d051203_P001	Maize	plastid	27.42	27.96
Zm00001d040322_P002	Maize	plastid	24.84	26.64
Zm00001d045430_P002	Maize	plastid	23.23	22.22
Zm00001d029121_P005	Maize	plastid	20.65	18.88
Zm00001d039167_P001	Maize	plastid	21.94	17.53

Protein Annotations

EntrezGene:100282832	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	ProteinID:AQK91722.1	EMBL:BT063040	UniProt:C0P421
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0009507
GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009840
GO:GO:0009941	GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127
ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF20	MEROPS:S14.A03	SUPFAM:SSF52096
UniParc:UPI00019490E8	EnsemblPlantsGene:Zm00001d009339	EnsemblPlants:Zm00001d009339_P001	EnsemblPlants:Zm00001d009339_T001	:	:

Description

ATP-dependent Clp protease proteolytic subunit

Coordinates

chr8:-:57192841..57201808

Molecular Weight (calculated)

33505.6 Da

IEP (calculated)

9.672

GRAVY (calculated)

-0.164

Length

310 amino acids

Sequence
(BLAST)

001: MAAFLAPPCT SFYRSSAFLT PCSSNRRSTA LRAAAVRGSA VTRAQRTVSA RWVPSRLAVA RPAARKACLE ELDTTNMLLR QRIVFLGSPV DDTSADLIIS
101: QLLLLDAEDQ TKDIKLFINS PGGSITAGMG VYDAMKFCKA DVSTVCFGLA ASMGAFLLAA GTKGKRYCMP NARIMIHQPS GGAGGKVTEM GLQIREMMYE
201: KIKINKIMSR ITGKSEEQID EDTKFDYFMS PSEAKDYGIV DNIIDEGKPG LVAPLAGSVP PPKSRVWYLW KASGPTRKIM KHLPSEEKLI HNGNGSATGD
301: DGKLKEATAT

Best Arabidopsis Sequence Match ( AT1G66670.1 )
(BLAST)

001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE

Arabidopsis Description

CLPP3ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.