Factsheet for PGSC0003DMT400078756

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091280.2.1	Tomato	plastid	95.86	97.41
VIT_14s0006g01880.t01	Wine grape	plastid	67.52	66.25
KRH70450	Soybean	plastid	65.92	64.89
KRH01676	Soybean	plastid	65.92	64.29
AT1G66670.1	Thale cress	plastid	61.78	62.78
Bra004177.1-P	Field mustard	plastid	59.55	59.74
CDX96137	Canola	plastid	59.55	59.74
HORVU3Hr1G044510.1	Barley	extracellular	16.24	58.62
CDY36212	Canola	plastid	58.28	58.47
Os01t0507900-01	Rice	plastid	56.05	56.05
TraesCS3A01G197900.1	Wheat	plastid	53.82	55.05
HORVU3Hr1G044530.1	Barley	plastid	53.18	54.75
TraesCS3B01G229600.1	Wheat	plastid	53.5	54.72
EES00782	Sorghum	plastid	54.14	54.31
Zm00001d009339_P001	Maize	plastid	53.5	54.19
GSMUA_Achr4P13550_001	Banana	plastid	62.42	53.12
PGSC0003DMT400055547	Potato	cytosol	10.83	49.28
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	13.69	40.95
PGSC0003DMT400027435	Potato	mitochondrion	28.03	36.97
PGSC0003DMT400082481	Potato	mitochondrion	27.07	36.02
PGSC0003DMT400079259	Potato	plastid	33.44	35.12
PGSC0003DMT400084282	Potato	plastid	27.39	31.27
PGSC0003DMT400010090	Potato	cytosol, plastid	24.84	26.99
PGSC0003DMT400067452	Potato	plastid	22.61	23.51
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	33.44	18.62
PGSC0003DMT400065220	Potato	plastid	20.38	16.29

Protein Annotations

EntrezGene:102600187	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008236	GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009840	GO:GO:0009941	GO:GO:0016787	GO:GO:0019538
UniProt:M1D0N8	HAMAP:MF_00444	PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG402030641	PGSC:PGSC0003DMG402030641	EnsemblPlants:PGSC0003DMT400078756
PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF20	MEROPS:S14.A03
SUPFAM:SSF52096	UniParc:UPI0002949842	RefSeq:XP_006357792.1	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402030641]

Coordinates

chr2:-:41745051..41749888

Molecular Weight (calculated)

34971.9 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.449

Length

314 amino acids

Sequence
(BLAST)

001: MEGSCLTFST ALAPARPSTC LHYNSTFVKQ FQTNTITPRR GLSVKASTHN FSTSKPTLSR NWDVSNYSKA PAWMPRFEEL DTTNMLLRQR IIFLGSQVDD
101: ITADFIISQL LILDAEDDKK DIRLIINSPG GSVTAGMGIY DAMKMCKADV STICMGLAAS MGAFLLASGS KGKRYCMPNA KVMIHQPLGT SGGKATEMSI
201: RIREMGYHKM KLNKILSRVT GQPLEKVEVD TDRDNFMNAW ESKEYGLVDA VIDDGKPGLV APITDDAPPP KTQVWYKWKA EGTKKRKNNW PSEERLFQND
301: EQSNEQKDEA LSPL

Best Arabidopsis Sequence Match ( AT1G66670.1 )
(BLAST)

001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE

Arabidopsis Description

CLPP3ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.