Factsheet for Solyc02g091280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078756	Potato	plastid	97.41	95.86
VIT_14s0006g01880.t01	Wine grape	plastid	69.9	67.5
KRH70450	Soybean	plastid	67.96	65.83
KRH01676	Soybean	plastid	67.96	65.22
AT1G66670.1	Thale cress	plastid	62.46	62.46
Bra004177.1-P	Field mustard	plastid	60.19	59.42
CDX96137	Canola	plastid	60.19	59.42
HORVU3Hr1G044510.1	Barley	extracellular	16.5	58.62
CDY36212	Canola	plastid	58.9	58.15
Os01t0507900-01	Rice	plastid	58.58	57.64
TraesCS3A01G197900.1	Wheat	plastid	56.63	57.0
HORVU3Hr1G044530.1	Barley	plastid	55.99	56.72
TraesCS3B01G229600.1	Wheat	plastid	56.31	56.68
EES00782	Sorghum	plastid	56.63	55.91
Zm00001d009339_P001	Maize	plastid	55.99	55.81
GSMUA_Achr4P13550_001	Banana	plastid	65.37	54.74
Solyc04g009310.2.1	Tomato	plastid	27.83	36.44
Solyc01g007490.2.1	Tomato	plastid	23.95	35.92
Solyc01g100520.2.1	Tomato	plastid	34.63	35.79
Solyc08g075750.2.1	Tomato	plastid	33.66	34.44
Solyc10g051310.1.1	Tomato	plastid	27.18	30.55
Solyc08g079620.2.1	Tomato	plastid	25.24	26.99
Solyc09g065790.1.1	Tomato	cytosol	14.89	26.14
Solyc08g077890.2.1	Tomato	plastid	23.3	23.84
Solyc01g099690.2.1	Tomato	plastid	20.39	19.33
Solyc10g049710.1.1	Tomato	plastid	21.36	17.19

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008236	GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009840	GO:GO:0009941	GO:GO:0016787	GO:GO:0019538	UniProt:K4BCS6
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF20	MEROPS:S14.A03	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc02g091280.2	EnsemblPlants:Solyc02g091280.2.1	UniParc:UPI000276798B

Description

ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G66670) UniProtKB/Swiss-Prot;Acc:Q9SXJ6]

Coordinates

chr2:-:52622008..52626712

Molecular Weight (calculated)

34379.3 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.426

Length

309 amino acids

Sequence
(BLAST)

001: MEGSCLTFST ALAPARPSTC LHYNSTFVKQ FQTNTITPRR GLSVKASTHK PTLSTNWDVS SYSKAPAWMP RFEELDTTNM LLRQRIIFLG SQVDDITADF
101: IISQLLILDA EDDKKDIRLI INSPGGSVTA GMGIYDAMKM CKADVSTICM GLAASMGAFL LASGSKGKRY CMPNAKVMIH QPLGTSGGKA TEMGIRIREM
201: GYHKMKLNKI LSRVTGQPLE KIEVDTDRDN FMNAWESKEY GLVDAVIDDG KPGLVAPITE DAPPPKTRVW YKWKAEGTRK RKNNWPSEEK LFQNDEQSNE
301: QKDEALSPL

Best Arabidopsis Sequence Match ( AT1G66670.1 )
(BLAST)

001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE

Arabidopsis Description

CLPP3ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.