Factsheet for Solyc01g099690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g02160.t01	Wine grape	plastid	76.99	77.95
CDY71339	Canola	endoplasmic reticulum	29.75	75.78
KRH68514	Soybean	plastid	74.23	74.69
KRG96809	Soybean	plastid	73.62	73.39
Bra030756.1-P	Field mustard	plastid	70.55	71.21
CDY31112	Canola	plastid	70.55	71.21
CDY32150	Canola	plastid	69.94	70.15
GSMUA_Achr3P08150_001	Banana	plastid	70.86	68.55
CDX95009	Canola	plastid	62.27	66.12
AT1G09130.3	Thale cress	plastid	72.39	63.78
Os03t0344900-00	Rice	plastid	60.43	57.77
OQU92609	Sorghum	plastid	59.82	57.52
Zm00001d029121_P005	Maize	plastid	59.2	56.93
TraesCS4A01G139700.3	Wheat	plastid	57.98	56.08
TraesCS4B01G154900.3	Wheat	plastid	57.67	55.79
TraesCS4D01G167900.1	Wheat	golgi, plastid	57.67	55.79
HORVU4Hr1G046480.1	Barley	plastid	57.98	50.81
Solyc08g077890.2.1	Tomato	plastid	31.6	34.11
Solyc04g009310.2.1	Tomato	plastid	21.47	29.66
Solyc10g051310.1.1	Tomato	plastid	23.01	27.27
Solyc08g075750.2.1	Tomato	plastid	23.62	25.5
Solyc10g049710.1.1	Tomato	plastid	29.75	25.26
Solyc01g007490.2.1	Tomato	plastid	15.64	24.76
Solyc08g079620.2.1	Tomato	plastid	19.63	22.15
Solyc01g100520.2.1	Tomato	plastid	20.25	22.07
Solyc02g091280.2.1	Tomato	plastid	19.33	20.39
Solyc09g065790.1.1	Tomato	cytosol	9.82	18.18

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	UniProt:K4B103	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381
PANTHER:PTHR10381:SF6	MEROPS:S14.003	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc01g099690.2	EnsemblPlants:Solyc01g099690.2.1	TMHMM:TMhelix
UniParc:UPI0002768F63	SEG:seg	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G09130) UniProtKB/Swiss-Prot;Acc:Q8L770]

Coordinates

chr1:+:89855623..89864119

Molecular Weight (calculated)

36003.5 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.164

Length

326 amino acids

Sequence
(BLAST)

001: MATCLRLPMA SSIPCSSSSS MTLKHRSFNF RCAAYSNSSS NIPMPPFNPK DPFLSKLASV AANNPDALFS RPQNSDMPPF LDIYDSPKLM ATPAQVERSV
101: SYNEHRASTP PPDLPSMLLH GRIVYIGMPL VSAVTELVIA ELMYLQYMDP KAPIYLYINS TGTTRDDGET VGMEAEGFAI YDSMMQLQNE IHTVAVGAAI
201: GQACLLLAAG TKGKRFMMPH AKAMIQQPRA PSSGLMQASD VYIRAKEVLV NRDNLVKLLA KHTENSEETV SNVMRRPYYM DSIKAREFGV IDKILWRGQE
301: QEQIIASVDA PEVWDNRAGI KVADAF

Best Arabidopsis Sequence Match ( AT1G09130.3 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSAS WRRTNRLTKI TLAADCLVSN HLVNVNMRLG ESYLKDLEIL

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.