Factsheet for TraesCS4D01G167900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G154900.3	Wheat	plastid	99.11	99.11
TraesCS4A01G139700.3	Wheat	plastid	99.11	99.11
HORVU4Hr1G046480.1	Barley	plastid	99.41	90.05
Zm00001d029121_P005	Maize	plastid	88.43	87.91
OQU92609	Sorghum	plastid	88.13	87.61
Os03t0344900-00	Rice	plastid	85.46	84.46
CDY71339	Canola	endoplasmic reticulum	25.82	67.97
VIT_14s0060g02160.t01	Wine grape	plastid	62.02	64.91
KRH68514	Soybean	plastid	59.64	62.04
KRG96809	Soybean	plastid	59.94	61.77
Bra030756.1-P	Field mustard	plastid	59.05	61.61
CDY31112	Canola	plastid	59.05	61.61
CDY32150	Canola	plastid	58.46	60.62
GSMUA_Achr3P08150_001	Banana	plastid	60.53	60.53
Solyc01g099690.2.1	Tomato	plastid	55.79	57.67
CDX95009	Canola	plastid	51.63	56.68
AT1G09130.3	Thale cress	plastid	58.46	53.24
TraesCS3D01G191100.2	Wheat	plastid	30.56	32.91
TraesCS4D01G184400.1	Wheat	plastid	24.33	29.08
TraesCS6D01G214700.1	Wheat	plastid	25.22	28.72
TraesCS2D01G372600.1	Wheat	plastid	25.22	28.33
TraesCS1D01G445300.1	Wheat	plastid	28.19	24.42
TraesCS2D01G271200.1	Wheat	cytosol	13.65	23.23
TraesCS4D01G157200.1	Wheat	plastid	18.1	22.93
TraesCS3D01G053300.1	Wheat	cytosol	14.54	22.69
TraesCS1D01G182500.1	Wheat	cytosol, peroxisome, plastid	12.17	22.65
TraesCS1D01G202100.1	Wheat	plastid	19.88	22.64
TraesCS7D01G072100.1	Wheat	plastid	19.58	22.15
TraesCS5D01G009400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	13.06	21.89
TraesCS1D01G435100.1	Wheat	cytosol	13.65	21.3

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009941	GO:GO:0016787	GO:GO:0019538
PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF6	SUPFAM:SSF52096	EnsemblPlantsGene:TraesCS4D01G167900
EnsemblPlants:TraesCS4D01G167900.1	TIGR:cd07017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:+:291932335..291953371

Molecular Weight (calculated)

36579.3 Da

IEP (calculated)

9.441

GRAVY (calculated)

-0.190

Length

337 amino acids

Sequence
(BLAST)

001: MASSFLSLRL PTPSPPTATS SPFFPNPLVR SGRCSPPSST LVARVAGSAA GAPSPLFNPR GDPFLSTLAA ASPEQLAAAA GGERRGEDHL PFLEIFQNAK
101: LMSSPAQVER SSSSYSQHSP RRPPPDLPSL LLHGRIVYIG MPLVPAVTEL IVAQLMYLDW MNSSEPAYIY INSTGTARDD GEPVGMETEG FAIYDAMMRM
201: KTEVHTLCIG AAAGHACLVL SAGKKGKRYM FPHAKALIQQ PRIPSYGMMQ ASDVVIRAKE VVHNRNTLVK LLARHTGNPP EKIDKVMRGP FYMDSLKAKE
301: FGVIDKILWR GQEKYMSDML SPEDWDKVAG VRGPGGM

Best Arabidopsis Sequence Match ( AT1G09130.1 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSVV

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.