Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G053300.1 | Wheat | cytosol | 96.13 | 80.56 |
| GRMZM5G804708_P01 | Maize | plastid | 96.13 | 80.56 |
| HORVU0Hr1G027550.1 | Barley | cytosol | 95.58 | 80.09 |
| HORVU5Hr1G065060.1 | Barley | cytosol | 95.58 | 80.09 |
| HORVU7Hr1G065830.1 | Barley | cytosol | 95.58 | 80.09 |
| TraesCS1D01G435100.1 | Wheat | cytosol | 95.03 | 79.63 |
| CAA33972 | Rice | cytosol | 93.92 | 78.7 |
| TraesCS2D01G271200.1 | Wheat | cytosol | 81.22 | 74.24 |
| TraesCS5D01G009400.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plastid | 79.01 | 71.14 |
| ATCG00670.1 | Thale cress | cytosol | 59.67 | 55.1 |
| PGSC0003DMT400055547 | Potato | cytosol | 20.44 | 53.62 |
| Solyc01g007490.2.1 | Tomato | plastid | 55.8 | 49.03 |
| PGSC0003DMT400013567 | Potato | cytosol, endoplasmic reticulum, mitochondrion | 25.41 | 43.81 |
| Solyc09g065790.1.1 | Tomato | cytosol | 25.97 | 26.7 |
| TraesCS4D01G157200.1 | Wheat | plastid | 32.04 | 21.8 |
| TraesCS1D01G202100.1 | Wheat | plastid | 33.15 | 20.27 |
| TraesCS7D01G072100.1 | Wheat | plastid | 33.15 | 20.13 |
| TraesCS4D01G184400.1 | Wheat | plastid | 30.94 | 19.86 |
| TraesCS6D01G214700.1 | Wheat | plastid | 29.28 | 17.91 |
| TraesCS2D01G372600.1 | Wheat | plastid | 29.28 | 17.67 |
| TraesCS3D01G191100.2 | Wheat | plastid | 22.65 | 13.1 |
| TraesCS4D01G167900.1 | Wheat | golgi, plastid | 22.65 | 12.17 |
| TraesCS1D01G445300.1 | Wheat | plastid | 21.55 | 10.03 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:35.1 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_His_AS |
| InterPro:ClpP_Ser_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 | PFAM:PF00574 | PRINTS:PR00127 | ScanProsite:PS00381 |
| ScanProsite:PS00382 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF19 | SUPFAM:SSF52096 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1D01G182500 |
| EnsemblPlants:TraesCS1D01G182500.1 | TIGR:cd07017 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:254496067..254496716
Molecular Weight (calculated)
20897.3 Da
IEP (calculated)
4.575
GRAVY (calculated)
-0.106
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIGVPKVPY RIPGDEEATW VDLYNVMYRE RTLFLGGWLI SGMAIFDMMQ TVTPDIYTIC LGIAASMASF ILLGGEPTKR IQFPHARIML HQPASAYYRA
101: RTPEYLLEVE ELHKVREMIT RVYAVRTGKP FWVVSEDMER DDFMSADEAK AYGLVDIAGD EMIDKHCDTD PVWFPEMFKD W
101: RTPEYLLEVE ELHKVREMIT RVYAVRTGKP FWVVSEDMER DDFMSADEAK AYGLVDIAGD EMIDKHCDTD PVWFPEMFKD W
001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
Arabidopsis Description
CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.