Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055547 | Potato | cytosol | 26.02 | 73.91 |
| Solyc01g007490.2.1 | Tomato | plastid | 75.0 | 71.36 |
| PGSC0003DMT400013567 | Potato | cytosol, endoplasmic reticulum, mitochondrion | 37.76 | 70.48 |
| TraesCS1A01G111400.1 | Wheat | cytosol | 37.76 | 64.91 |
| TraesCSU01G266900.1 | Wheat | cytosol | 56.63 | 61.33 |
| HORVU6Hr1G037220.1 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| HORVU6Hr1G023010.1 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| HORVU5Hr1G065060.1 | Barley | cytosol | 67.35 | 61.11 |
| AGP50779 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| HORVU6Hr1G049380.1 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| HORVU0Hr1G037900.1 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| HORVU0Hr1G036940.1 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| HORVU0Hr1G029900.1 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| HORVU0Hr1G027550.1 | Barley | cytosol | 67.35 | 61.11 |
| HORVU0Hr1G026150.1 | Barley | cytosol, peroxisome, plastid | 67.35 | 61.11 |
| GRMZM5G804708_P01 | Maize | plastid | 67.35 | 61.11 |
| HORVU7Hr1G065830.1 | Barley | cytosol | 67.35 | 61.11 |
| TraesCS3D01G053300.1 | Wheat | cytosol | 67.35 | 61.11 |
| TraesCS1D01G435100.1 | Wheat | cytosol | 66.84 | 60.65 |
| TraesCS3B01G187300.1 | Wheat | cytosol | 66.84 | 60.65 |
| CAA33972 | Rice | cytosol | 65.82 | 59.72 |
| HORVU3Hr1G053800.1 | Barley | endoplasmic reticulum | 42.35 | 59.71 |
| TraesCS1D01G182500.1 | Wheat | cytosol, peroxisome, plastid | 55.1 | 59.67 |
| HORVU3Hr1G044750.2 | Barley | cytosol | 41.84 | 59.42 |
| TraesCS5D01G009400.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plastid | 58.16 | 56.72 |
| TraesCS2D01G271200.1 | Wheat | cytosol | 57.14 | 56.57 |
| TraesCS3A01G215600.1 | Wheat | cytosol | 48.98 | 52.17 |
| Solyc09g065790.1.1 | Tomato | cytosol | 40.31 | 44.89 |
| AT5G23140.1 | Thale cress | mitochondrion, plastid | 35.2 | 28.63 |
| AT1G12410.1 | Thale cress | plastid | 37.24 | 26.16 |
| AT5G45390.1 | Thale cress | plastid | 34.69 | 23.29 |
| AT1G02560.1 | Thale cress | plastid | 35.2 | 23.15 |
| AT1G66670.1 | Thale cress | plastid | 34.69 | 22.01 |
| AT1G11750.2 | Thale cress | plastid | 31.63 | 21.45 |
| AT4G17040.1 | Thale cress | plastid | 28.57 | 18.36 |
| AT1G49970.1 | Thale cress | plastid | 26.53 | 13.44 |
| AT1G09130.3 | Thale cress | plastid | 25.0 | 13.24 |
Protein Annotations
| MapMan:19.4.2.9.1 | Gene3D:3.90.226.10 | ArrayExpress:ATCG00670 | EnsemblPlantsGene:ATCG00670 | RefSeq:ATCG00670 | TAIR:ATCG00670 |
| RefSeq:ATCG00670-TAIR-G | EnsemblPlants:ATCG00670.1 | TAIR:ATCG00670.1 | Symbol:CLPP1 | InterPro:ClpP | InterPro:ClpP/TepA |
| InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_His_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008236 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0016787 |
| GO:GO:0019538 | HAMAP:MF_00444 | PFAM:PF00574 | PRINTS:PR00127 | ScanProsite:PS00382 | PANTHER:PTHR10381 |
| PANTHER:PTHR10381:SF19 | SUPFAM:SSF52096 | TMHMM:TMhelix | UniParc:UPI0000127B2A | : | : |
Description
CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
Coordinates
chrPt:-:69910..71882
Molecular Weight (calculated)
22098.8 Da
IEP (calculated)
4.726
GRAVY (calculated)
0.138
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.