Factsheet for HORVU3Hr1G053800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094480.1
HORVU3Hr1G038610.4
HORVU3Hr1G044510.1
HORVU3Hr1G044530.1
HORVU4Hr1G053660.1
HORVU4Hr1G063150.3
HORVU7Hr1G017670.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00670.1	HORVU4Hr1G053660.1	AT1G02560.1	14593120
ATCG00670.1	HORVU7Hr1G017670.1	AT1G12410.1	14593120
ATCG00670.1	HORVU1Hr1G094480.1	AT1G49970.1	14593120
ATCG00670.1	HORVU3Hr1G044510.1	AT1G66670.1	14593120
ATCG00670.1	HORVU3Hr1G044530.1	AT1G66670.1	14593120
ATCG00670.1	HORVU4Hr1G063150.3	AT4G12060.1	14593120
ATCG00670.1	HORVU3Hr1G038610.4	AT4G17040.1	14593120
ATCG00670.1	HORVU4Hr1G063150.3	AT4G25370.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G266900.1	Wheat	cytosol	97.84	75.14
AGP50779	Barley	cytosol, peroxisome, plastid	100.0	64.35
HORVU6Hr1G023010.1	Barley	cytosol, peroxisome, plastid	100.0	64.35
HORVU6Hr1G037220.1	Barley	cytosol, peroxisome, plastid	100.0	64.35
HORVU6Hr1G049380.1	Barley	cytosol, peroxisome, plastid	100.0	64.35
HORVU0Hr1G037900.1	Barley	cytosol, peroxisome, plastid	100.0	64.35
HORVU0Hr1G036940.1	Barley	cytosol, peroxisome, plastid	100.0	64.35
HORVU0Hr1G029900.1	Barley	cytosol, peroxisome, plastid	100.0	64.35
HORVU0Hr1G026150.1	Barley	cytosol, peroxisome, plastid	100.0	64.35
TraesCS3B01G187300.1	Wheat	cytosol	98.56	63.43
GRMZM5G804708_P01	Maize	plastid	98.56	63.43
HORVU0Hr1G027550.1	Barley	cytosol	97.84	62.96
HORVU7Hr1G065830.1	Barley	cytosol	97.84	62.96
HORVU5Hr1G065060.1	Barley	cytosol	97.84	62.96
CAA33972	Rice	cytosol	95.68	61.57
PGSC0003DMT400055547	Potato	cytosol	23.74	47.83
ATCG00670.1	Thale cress	cytosol	59.71	42.35
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.86	37.66
HORVU3Hr1G044750.2	Barley	cytosol	36.69	36.96
Solyc01g007490.2.1	Tomato	plastid	54.68	36.89
TraesCS1A01G111400.1	Wheat	cytosol	25.9	31.58
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	23.74	31.43
HORVU3Hr1G044510.1	Barley	extracellular	18.7	29.89
Solyc09g065790.1.1	Tomato	cytosol	21.58	17.05
HORVU4Hr1G038160.2	Barley	plastid	34.53	16.96
HORVU4Hr1G053660.1	Barley	plastid	36.69	16.67
HORVU3Hr1G044530.1	Barley	plastid	35.97	16.39
HORVU2Hr1G090470.1	Barley	plastid	33.81	13.91
HORVU7Hr1G017670.1	Barley	plastid	29.5	12.73
HORVU3Hr1G038610.4	Barley	plastid	23.02	11.27
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	33.81	10.85
HORVU4Hr1G046480.1	Barley	plastid	24.46	9.14
HORVU1Hr1G094480.1	Barley	plastid	22.3	7.31

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	UniProt:A0A287L335	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:HORVU3Hr1G053800	EnsemblPlants:HORVU3Hr1G053800.1	PFAM:PF00574
PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF19	SUPFAM:SSF52096
TMHMM:TMhelix	UniParc:UPI000B48297D	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A287L335]

Coordinates

chrchr3H:+:396540735..396541387

Molecular Weight (calculated)

15967.4 Da

IEP (calculated)

4.663

GRAVY (calculated)

0.005

Length

139 amino acids

Sequence
(BLAST)

001: MAIFDTMQTV TPDIYTICLG IAASMASFIL LGGEPAKRIA FPHARIMLHQ PASAYYRART PEFLLEVEEL HKVREMITRV YALRTGKPFW VVSEDMERDV
101: FMSADEAKAY GLVDIVGDEM IDKHCDTDPV WFPEMFKDW

Best Arabidopsis Sequence Match ( ATCG00670.1 )
(BLAST)

001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ

Arabidopsis Description

CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.