Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G083440.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 26.15 | 96.1 |
| TraesCS4D01G157200.1 | Wheat | plastid | 82.33 | 87.59 |
| TraesCS4B01G165100.1 | Wheat | plastid | 81.98 | 87.22 |
| TraesCS4A01G149900.1 | Wheat | plastid | 84.81 | 86.64 |
| Os03t0411500-01 | Rice | plastid | 73.85 | 80.69 |
| EES07709 | Sorghum | plastid | 71.73 | 73.55 |
| CDY21009 | Canola | plastid | 54.06 | 56.67 |
| CDY31211 | Canola | plastid | 54.06 | 56.67 |
| GSMUA_Achr8P05270_001 | Banana | plastid | 53.0 | 56.39 |
| VIT_03s0063g02300.t01 | Wine grape | plastid | 53.36 | 56.13 |
| CDY34832 | Canola | plastid | 54.06 | 56.04 |
| Bra031777.1-P | Field mustard | plastid | 54.06 | 56.04 |
| Bra016816.1-P | Field mustard | plastid | 53.0 | 55.56 |
| PGSC0003DMT400084282 | Potato | plastid | 53.71 | 55.27 |
| KRH29491 | Soybean | plastid | 53.0 | 54.95 |
| Solyc10g051310.1.1 | Tomato | plastid | 53.0 | 54.55 |
| KRH24490 | Soybean | plastid | 52.3 | 54.21 |
| AT1G11750.2 | Thale cress | plastid | 54.06 | 52.94 |
| CDY34630 | Canola | plastid | 26.15 | 41.57 |
| HORVU3Hr1G044510.1 | Barley | extracellular | 10.95 | 35.63 |
| HORVU3Hr1G053800.1 | Barley | endoplasmic reticulum | 16.96 | 34.53 |
| AGP50779 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU0Hr1G026150.1 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU5Hr1G065060.1 | Barley | cytosol | 24.03 | 31.48 |
| HORVU6Hr1G023010.1 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU6Hr1G037220.1 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU6Hr1G049380.1 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU0Hr1G027550.1 | Barley | cytosol | 24.03 | 31.48 |
| HORVU0Hr1G029900.1 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU7Hr1G065830.1 | Barley | cytosol | 24.03 | 31.48 |
| HORVU0Hr1G036940.1 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU0Hr1G037900.1 | Barley | cytosol, peroxisome, plastid | 24.03 | 31.48 |
| HORVU3Hr1G044750.2 | Barley | cytosol | 14.84 | 30.43 |
| HORVU3Hr1G044530.1 | Barley | plastid | 29.33 | 27.21 |
| HORVU4Hr1G053660.1 | Barley | plastid | 28.27 | 26.14 |
| HORVU2Hr1G090470.1 | Barley | plastid | 28.27 | 23.67 |
| HORVU3Hr1G038610.4 | Barley | plastid | 21.2 | 21.13 |
| HORVU6Hr1G059510.8 | Barley | cytosol, peroxisome | 27.92 | 18.24 |
| HORVU7Hr1G017670.1 | Barley | plastid | 20.14 | 17.7 |
| HORVU4Hr1G046480.1 | Barley | plastid | 21.91 | 16.67 |
| HORVU1Hr1G094480.1 | Barley | plastid | 19.43 | 12.97 |
Protein Annotations
| MapMan:19.4.2.9.1 | Gene3D:3.90.226.10 | UniProt:A0A287NU28 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf |
| InterPro:ClpP_His_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:HORVU4Hr1G038160 | EnsemblPlants:HORVU4Hr1G038160.2 | HAMAP:MF_00444 |
| PFAM:PF00574 | PRINTS:PR00127 | ScanProsite:PS00382 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF8 | SUPFAM:SSF52096 |
| UniParc:UPI000B47B6FE | SEG:seg | : | : | : | : |
Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A287NU28]
Coordinates
chrchr4H:-:287650341..287682617
Molecular Weight (calculated)
30475.7 Da
IEP (calculated)
6.524
GRAVY (calculated)
-0.018
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: PNLISPSLVL RSLPRSGTSG LSLEWRPWPS LRPSLSAPLP PAYSRTGGNG SSASPGLRGM QVLTSGVSAR LDERIHGQSY LRKNTIVASE NENPPLMPAI
101: MTPGGSLDLA TVLLGNRIIF IGQYVNSQVA QRVISQLVSL SAIDEEGDVL IYLNCPGGSL YSILAIYDCM SWITPKVGTV CFGVVASQAA IILAGGEKGM
201: RYAMPNARVM IHQPQGGSEG NTEEVRRQVG ETIYARDKVD KMFAAFTGQP IDIVRQWTER DRFMSSSEAM DFGLVDALLE TGC
101: MTPGGSLDLA TVLLGNRIIF IGQYVNSQVA QRVISQLVSL SAIDEEGDVL IYLNCPGGSL YSILAIYDCM SWITPKVGTV CFGVVASQAA IILAGGEKGM
201: RYAMPNARVM IHQPQGGSEG NTEEVRRQVG ETIYARDKVD KMFAAFTGQP IDIVRQWTER DRFMSSSEAM DFGLVDALLE TGC
001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP SSLPLPILNI LKSSTVYFIF GVIEAKKGNP
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
Arabidopsis Description
CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.