Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G083440.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 26.71 | 96.1 |
| TraesCS4D01G157200.1 | Wheat | plastid | 90.97 | 94.74 |
| TraesCS4B01G165100.1 | Wheat | plastid | 90.61 | 94.36 |
| HORVU4Hr1G038160.2 | Barley | plastid | 86.64 | 84.81 |
| Os03t0411500-01 | Rice | plastid | 77.26 | 82.63 |
| EES07709 | Sorghum | plastid | 73.65 | 73.91 |
| VIT_03s0063g02300.t01 | Wine grape | plastid | 56.68 | 58.36 |
| PGSC0003DMT400084282 | Potato | plastid | 57.76 | 58.18 |
| CDY21009 | Canola | plastid | 56.68 | 58.15 |
| CDY31211 | Canola | plastid | 56.68 | 58.15 |
| GSMUA_Achr8P05270_001 | Banana | plastid | 55.6 | 57.89 |
| Solyc10g051310.1.1 | Tomato | plastid | 57.04 | 57.45 |
| Bra016816.1-P | Field mustard | plastid | 55.6 | 57.04 |
| CDY34832 | Canola | plastid | 55.96 | 56.78 |
| Bra031777.1-P | Field mustard | plastid | 55.96 | 56.78 |
| KRH29491 | Soybean | plastid | 55.23 | 56.04 |
| KRH24490 | Soybean | plastid | 54.15 | 54.95 |
| AT1G11750.2 | Thale cress | plastid | 56.68 | 54.33 |
| CDY34630 | Canola | plastid | 27.08 | 42.13 |
| TraesCS1A01G111400.1 | Wheat | cytosol | 14.08 | 34.21 |
| TraesCS4A01G121500.1 | Wheat | plastid | 28.52 | 28.01 |
| TraesCS6A01G220500.1 | Wheat | plastid | 29.24 | 27.0 |
| TraesCS3A01G197900.1 | Wheat | plastid | 29.24 | 26.38 |
| TraesCS1A01G198400.1 | Wheat | plastid | 28.16 | 26.35 |
| TraesCS3A01G215600.1 | Wheat | cytosol | 16.97 | 25.54 |
| TraesCS3A01G187300.1 | Wheat | plastid | 22.02 | 21.4 |
| TraesCS7A01G076400.1 | Wheat | plastid | 21.66 | 20.0 |
| TraesCS4A01G374600.2 | Wheat | plastid | 21.66 | 18.99 |
| TraesCS4A01G139700.3 | Wheat | plastid | 22.02 | 18.1 |
| TraesCS1A01G437500.2 | Wheat | plastid | 19.49 | 13.95 |
Protein Annotations
| MapMan:19.4.2.9.1 | Gene3D:3.90.226.10 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_His_AS |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009532 |
| GO:GO:0009534 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009658 | GO:GO:0009840 |
| GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019538 |
| HAMAP:MF_00444 | PFAM:PF00574 | PRINTS:PR00127 | ScanProsite:PS00382 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF8 |
| SUPFAM:SSF52096 | EnsemblPlantsGene:TraesCS4A01G149900 | EnsemblPlants:TraesCS4A01G149900.1 | TIGR:cd07017 | : | : |
Description
No Description!
Coordinates
chr4A:-:292089772..292113646
Molecular Weight (calculated)
30149.4 Da
IEP (calculated)
6.900
GRAVY (calculated)
0.053
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISTALAVR ASHSTAPRLS RSCNHQLLVF SSSFACSPLF RRNGSSASPR LRGLQVLTSG VSAWLDERIH GQSYLRKNTI VASENENPPL MPAIMTPGGP
101: LDLATVLLGN RIIFIGQYVN SQVAQRVISQ LVTLSAIDEE GDILIYLNCP GGSLYSILAI YDCMSWITPK VGTVCFGVVA SQAAIILAGG EKGMRYAMPN
201: ARVMIHQPQG GSEGNTEEVR RQVGETIYAR DKVDKMFAAF TGQPIDIVRQ WTERDRFMSS SEAMDFGLVD ALLETEC
101: LDLATVLLGN RIIFIGQYVN SQVAQRVISQ LVTLSAIDEE GDILIYLNCP GGSLYSILAI YDCMSWITPK VGTVCFGVVA SQAAIILAGG EKGMRYAMPN
201: ARVMIHQPQG GSEGNTEEVR RQVGETIYAR DKVDKMFAAF TGQPIDIVRQ WTERDRFMSS SEAMDFGLVD ALLETEC
001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP SSLPLPILNI LKSSTVYFIF GVIEAKKGNP
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
Arabidopsis Description
CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.