Factsheet for VIT_03s0063g02300.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29491	Soybean	plastid	77.32	76.19
KRH24490	Soybean	plastid	76.21	75.09
PGSC0003DMT400084282	Potato	plastid	74.35	72.73
Solyc10g051310.1.1	Tomato	plastid	73.98	72.36
CDY21009	Canola	plastid	72.12	71.85
CDY31211	Canola	plastid	72.12	71.85
GSMUA_Achr8P05270_001	Banana	plastid	71.0	71.8
Bra016816.1-P	Field mustard	plastid	71.75	71.48
CDY34832	Canola	plastid	72.49	71.43
Bra031777.1-P	Field mustard	plastid	71.38	70.33
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.07	70.13
AT1G11750.2	Thale cress	plastid	73.61	68.51
Os03t0411500-01	Rice	plastid	59.85	62.16
TraesCS4D01G157200.1	Wheat	plastid	57.99	58.65
CDY34630	Canola	plastid	38.66	58.43
TraesCS4B01G165100.1	Wheat	plastid	57.25	57.89
TraesCS4A01G149900.1	Wheat	plastid	58.36	56.68
EES07709	Sorghum	plastid	57.99	56.52
HORVU4Hr1G038160.2	Barley	plastid	56.13	53.36
VIT_01s0011g02100.t01	Wine grape	mitochondrion	29.0	32.37
VIT_07s0005g01530.t01	Wine grape	plastid	32.34	30.1
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	16.36	27.67
VIT_02s0025g05140.t01	Wine grape	plastid	28.62	26.46
VIT_12s0028g01250.t01	Wine grape	plastid	28.62	26.46
VIT_14s0006g01880.t01	Wine grape	plastid	31.23	26.25
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	15.61	24.85
VIT_14s0060g02160.t01	Wine grape	plastid	26.77	22.36
VIT_00s0204g00220.t01	Wine grape	plastid	23.79	21.92
VIT_03s0091g00700.t01	Wine grape	plastid	24.91	17.27

Protein Annotations

EntrezGene:100852857	wikigene:100852857	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	ProteinID:CBI32566	ProteinID:CBI32566.3
ProteinID:CCB58737	ProteinID:CCB58737.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
UniProt:D7TPZ3	EMBL:FN596006	EMBL:FN596257	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009658	GO:GO:0009840	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	EntrezGene:LOC100852857	wikigene:LOC100852857	HAMAP:MF_00444
PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF8	MEROPS:S14.006
SUPFAM:SSF52096	TIGR:TC54916	UniParc:UPI0001982E3F	ArrayExpress:VIT_03s0063g02300	EnsemblPlantsGene:VIT_03s0063g02300	EnsemblPlants:VIT_03s0063g02300.t01
unigene:Vvi.3539	RefSeq:XP_003631636	RefSeq:XP_003631636.1	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:D7TPZ3]

Coordinates

chr3:-:5554237..5560438

Molecular Weight (calculated)

28810.7 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.012

Length

269 amino acids

Sequence
(BLAST)

001: MVASAISTTL SSSIVSRNTS SSISFFSPRY STKPIVSALS KSSSIGLSSK TSGLSLKVDE RGRHAGNPSY GAIEAKKGNP PVAPSVMTPG GPLDLSTVLF
101: RSRIIFIGQP INSMVAQRVI SQLVTLAAID EDADILMYLN CPGGSTYSVL AIYDCMAWIK PKVGTVCFGV AASQGALLLA GGEKGMRYAM PNARIMVHQP
201: QGGCGGHVED VRRQVNEAVQ SRHKIDKMYA AFTGQPLEQV QQYTERDRFL SASEAMEFGF IDGILETEY

Best Arabidopsis Sequence Match ( AT1G11750.1 )
(BLAST)

001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV
101: LFRNRIIFIG QPINAQVAQR VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL LAGGEKGMRY AMPNTRVMIH
201: QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE KVQQYTERDR FLSASEALEF GLIDGLLETE Y

Arabidopsis Description

CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.