Factsheet for VIT_07s0005g01530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51306	Canola	plastid	77.16	80.51
Bra033332.1-P	Field mustard	plastid	80.97	79.59
CDX89962	Canola	plastid	80.97	79.59
AT1G02560.1	Thale cress	plastid	81.66	79.19
Zm00001d047634_P002	Maize	cytosol	63.67	77.97
KRH31786	Soybean	nucleus, plastid	80.62	76.9
CDY15250	Canola	plastid	80.97	76.47
Bra030504.1-P	Field mustard	plastid	78.2	75.59
Solyc01g100520.2.1	Tomato	plastid	77.85	75.25
KRH69210	Soybean	nucleus, plastid	80.62	74.92
CDY15433	Canola	plastid	78.2	74.34
GSMUA_Achr8P22320_001	Banana	plastid	75.09	72.33
EER92371	Sorghum	plastid	68.51	69.96
TraesCS4A01G121500.1	Wheat	plastid	67.82	69.5
TraesCS4D01G184400.1	Wheat	plastid	67.82	69.5
TraesCS4B01G181600.1	Wheat	plastid	67.47	69.15
Os03t0308100-01	Rice	plastid	67.13	68.79
KRH68271	Soybean	plastid	66.44	63.79
HORVU4Hr1G053660.1	Barley	plastid	67.47	63.73
Zm00001d028895_P001	Maize	plastid	67.82	62.62
VIT_01s0011g02100.t01	Wine grape	mitochondrion	33.22	39.83
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	77.16	39.54
VIT_14s0006g01880.t01	Wine grape	plastid	38.75	35.0
VIT_12s0028g01250.t01	Wine grape	plastid	33.56	33.33
VIT_03s0063g02300.t01	Wine grape	plastid	30.1	32.34
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	16.95	30.82
VIT_02s0025g05140.t01	Wine grape	plastid	28.72	28.52
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	16.61	28.4
VIT_00s0204g00220.t01	Wine grape	plastid	26.3	26.03
VIT_14s0060g02160.t01	Wine grape	plastid	22.84	20.5
VIT_03s0091g00700.t01	Wine grape	plastid	24.57	18.3

Protein Annotations

EntrezGene:100246849	wikigene:100246849	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	ProteinID:CBI36957	ProteinID:CBI36957.3
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	UniProt:D7U2J1
EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008236	GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009840	GO:GO:0009941	GO:GO:0016787	GO:GO:0019538	EntrezGene:LOC100246849
wikigene:LOC100246849	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382
PANTHER:PTHR10381	PANTHER:PTHR10381:SF12	SUPFAM:SSF52096	TIGR:TC53240	TIGR:TC67364	UniParc:UPI00015CA2CB
ArrayExpress:VIT_07s0005g01530	EnsemblPlantsGene:VIT_07s0005g01530	EnsemblPlants:VIT_07s0005g01530.t01	unigene:Vvi.1420	RefSeq:XP_002277104	RefSeq:XP_002277104.1
RefSeq:XP_003632410	RefSeq:XP_003632410.1	SEG:seg	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:D7U2J1]

Coordinates

chr7:-:4047406..4055133

Molecular Weight (calculated)

31521.6 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.217

Length

289 amino acids

Sequence
(BLAST)

001: MAHTCVAFNS LIFSSNPTSS SDSHKLSFSS RKFTKLVGSE KRLRVAPVKA AYSGEFWAPD KNSRQGTWSI RDDLQIPSSA YFPTYAQGGQ GPPPMVQERF
101: QSVVSQLFQH RIIRCGGAVD DDMANIIVAQ LLYLDAVDPD KDIVMYVNSP GGSVTAGMAI FDTMRHIRPD VSTVCVGLAA SMGAFLLSCG TKGKRYSLPN
201: SRIMIHQPLG GAQGGQTDID IQANEMLHHK ANLNGYLSYH TGQSLEKINQ DTDRDFFMSA KEAKEYGLID GVILNPLKAL KPLVATADQ

Best Arabidopsis Sequence Match ( AT1G02560.1 )
(BLAST)

001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

Arabidopsis Description

CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.