Factsheet for PGSC0003DMT400007157

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100520.2.1	Tomato	plastid	46.63	87.96
CDY51306	Canola	plastid	38.48	78.34
Bra033332.1-P	Field mustard	plastid	40.43	77.55
CDX89962	Canola	plastid	40.43	77.55
Zm00001d047634_P002	Maize	cytosol	32.45	77.54
AT1G02560.1	Thale cress	plastid	40.78	77.18
VIT_07s0005g01530.t01	Wine grape	plastid	39.54	77.16
Bra030504.1-P	Field mustard	plastid	39.89	75.25
CDY15250	Canola	plastid	40.6	74.84
GSMUA_Achr8P22320_001	Banana	plastid	39.72	74.67
KRH31786	Soybean	nucleus, plastid	39.89	74.26
CDY15433	Canola	plastid	39.89	74.01
KRH69210	Soybean	nucleus, plastid	40.78	73.95
TraesCS4A01G121500.1	Wheat	plastid	35.64	71.28
TraesCS4D01G184400.1	Wheat	plastid	35.46	70.92
TraesCS4B01G181600.1	Wheat	plastid	35.46	70.92
Os03t0308100-01	Rice	plastid	35.28	70.57
EER92371	Sorghum	plastid	34.93	69.61
HORVU4Hr1G053660.1	Barley	plastid	35.82	66.01
Zm00001d028895_P001	Maize	plastid	34.93	62.94
KRH68271	Soybean	plastid	32.98	61.79
PGSC0003DMT400055547	Potato	cytosol	5.67	46.38
PGSC0003DMT400082481	Potato	mitochondrion	17.55	41.95
PGSC0003DMT400027435	Potato	mitochondrion	16.84	39.92
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	7.09	38.1
PGSC0003DMT400078756	Potato	plastid	18.62	33.44
PGSC0003DMT400079259	Potato	plastid	17.38	32.78
PGSC0003DMT400084282	Potato	plastid	15.25	31.27
PGSC0003DMT400010090	Potato	cytosol, plastid	14.01	27.34
PGSC0003DMT400067452	Potato	plastid	13.83	25.83
PGSC0003DMT400065220	Potato	plastid	12.23	17.56

Protein Annotations

EntrezGene:102579725	MapMan:19.4.2.9.1	Gene3D:3.40.50.1110	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	InterPro:GDSL	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008236	GO:GO:0016298	GO:GO:0016787	GO:GO:0016788	GO:GO:0019538	InterPro:IPR036514
InterPro:Lipase_GDSL_AS	UniProt:M0ZSK0	HAMAP:MF_00444	PFAM:PF00574	PFAM:PF00657	EnsemblPlantsGene:PGSC0003DMG400002768
PGSC:PGSC0003DMG400002768	EnsemblPlants:PGSC0003DMT400007157	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	ScanProsite:PS01098
PANTHER:PTHR10381	PANTHER:PTHR10381:SF12	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	SUPFAM:SSF52096	SignalP:SignalP-noTM
UniParc:UPI000294F3AB	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400002768]

Coordinates

chr1:-:78182128..78190336

Molecular Weight (calculated)

61567.6 Da

IEP (calculated)

9.279

GRAVY (calculated)

-0.042

Length

564 amino acids

Sequence
(BLAST)

001: LMKIMKSFSH IFLLLSTLVI FRGAKANLQQ SYNVSSIIPA VFVFGDSIVD TGNNNYLVTI VKGNIPQNGK NFMGGKATGR FSDGKIPSDI LVEQLGIKEL
101: LPPYLDPKLQ AKDLITGVTF ASSGSGYDPK TNVLLSVLSI PKQLELFKEY IGKLKAIVGE AKALEIVSNS LFIVLSGHND IQLNPASILN PSYNELLVKF
201: ASNFVQELYK LGARKIGVFG VLPIGCMPLH RNTRGGLRKN CVDSLNEKAY SFNNKLSIEI NSLSNKFPDA KMVYIDFYNF TFDLINNPTK YGYKITKNGC
301: CALLGKIELN GKVKNRGNST VKAVYSGADW DLAKASRSSG IWSIRDDVQI PSSPYFPTYA AQGQGPPPMV QERFQSVISQ LFQYRIIRCG GAVDDDMANV
401: IVAQLLYLDA VDPTKDIVMY VNSPGGSVTA GMAVFDTMRH IRPDVSTVCV GLAASMGAFL LSAGTKGKRY SLPNSRIMIH QPLGGAQGGQ TDIDIQANEM
501: LHHKANLNGY LAYQTGQSLD RINQDTDRDF FMSAKEAKEY GLIDGVIMNP MKALQPLAAA AEQS

Best Arabidopsis Sequence Match ( AT1G02560.1 )
(BLAST)

001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

Arabidopsis Description

CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.