Factsheet for PGSC0003DMT400065220

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g049710.1.1	Tomato	plastid	89.82	91.93
KRG91103	Soybean	plastid	67.18	70.97
KRH35674	Soybean	plastid	67.18	70.97
VIT_03s0091g00700.t01	Wine grape	plastid	68.45	69.33
CDY46278	Canola	cytosol	38.42	66.81
AT1G49970.1	Thale cress	plastid	65.65	66.67
Bra014229.1-P	Field mustard	plastid	65.65	66.49
CDY59367	Canola	plastid	65.65	66.49
CDY03582	Canola	plastid	65.65	66.32
GSMUA_Achr2P08390_001	Banana	plastid	65.39	64.57
Os05t0592100-01	Rice	plastid	52.93	53.89
EES20050	Sorghum	plastid	52.93	53.61
TraesCS1B01G472100.1	Wheat	plastid	51.91	52.99
TraesCS1D01G445300.1	Wheat	plastid	51.91	52.44
Zm00001d039167_P001	Maize	plastid	51.65	52.32
TraesCS1A01G437500.2	Wheat	plastid	51.4	52.2
HORVU1Hr1G094480.1	Barley	plastid	51.4	47.64
PGSC0003DMT400067452	Potato	plastid	25.95	33.77
PGSC0003DMT400055547	Potato	cytosol	4.58	26.09
PGSC0003DMT400027435	Potato	mitochondrion	15.52	25.63
PGSC0003DMT400010090	Potato	cytosol, plastid	18.58	25.26
PGSC0003DMT400082481	Potato	mitochondrion	15.01	25.0
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	6.62	24.76
PGSC0003DMT400079259	Potato	plastid	17.3	22.74
PGSC0003DMT400078756	Potato	plastid	16.29	20.38
PGSC0003DMT400084282	Potato	plastid	13.23	18.91
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	17.56	12.23

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	UniProt:M1CDL1	PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG400025349	PGSC:PGSC0003DMG400025349	EnsemblPlants:PGSC0003DMT400065220
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF18	SUPFAM:SSF52096	UniParc:UPI000296E4FF	SEG:seg

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400025349]

Coordinates

chr3:+:53040092..53049526

Molecular Weight (calculated)

43412.7 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.398

Length

393 amino acids

Sequence
(BLAST)

001: MASSLLLSPL SLANNRELDS RIVLHKSTFL PIPNFFFSAS LHLHSRSRPN AGVRGYSYRS PVAQSFDHIP TQFRQENLKD GLLNNYKNAP QYLYGLSPSQ
101: MDMFMTEDNP ARRQSGSVTE ESIASSHNYL KNGGMWSMPG MNKWGPSTCS MSVSMYGGGG GGARSDRPPT APPDLPSLLL DARIVYLGMP IVEAVTELIV
201: AQFMWLDFDN PTKPVYLYIN SSGTQNEEME TVGSETEAYA IADMIGYCKS DVYTVNCGMA FGQAAMLLSQ GKKGFRAMQP HSSTKLYLPK VSKSSGAPIE
301: MWIKAKELES NSEYYLELLS QGTGKPKEEI KKDILRPKYF RALEAIDYGL ADKIISSSDD AFDKRNYEEM LLQSRAMSRP GGPGAQAAPS GFR

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.