Factsheet for PGSC0003DMT400084282

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g051310.1.1	Tomato	plastid	94.91	94.91
VIT_03s0063g02300.t01	Wine grape	plastid	72.73	74.35
KRH29491	Soybean	plastid	72.36	72.89
KRH24490	Soybean	plastid	71.64	72.16
GSMUA_Achr8P05270_001	Banana	plastid	68.0	70.3
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.64	70.13
CDY21009	Canola	plastid	67.27	68.52
CDY31211	Canola	plastid	67.27	68.52
Bra016816.1-P	Field mustard	plastid	66.55	67.78
CDY34832	Canola	plastid	66.91	67.4
Bra031777.1-P	Field mustard	plastid	66.18	66.67
AT1G11750.2	Thale cress	plastid	67.64	64.36
Os03t0411500-01	Rice	plastid	57.82	61.39
TraesCS4D01G157200.1	Wheat	plastid	56.36	58.27
TraesCS4A01G149900.1	Wheat	plastid	58.18	57.76
TraesCS4B01G165100.1	Wheat	plastid	55.64	57.52
EES07709	Sorghum	plastid	57.45	57.25
HORVU4Hr1G038160.2	Barley	plastid	55.27	53.71
CDY34630	Canola	plastid	34.55	53.37
PGSC0003DMT400055547	Potato	cytosol	10.91	43.48
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	14.18	37.14
PGSC0003DMT400082481	Potato	mitochondrion	29.09	33.9
PGSC0003DMT400027435	Potato	mitochondrion	28.0	32.35
PGSC0003DMT400079259	Potato	plastid	31.27	28.76
PGSC0003DMT400078756	Potato	plastid	31.27	27.39
PGSC0003DMT400010090	Potato	cytosol, plastid	26.55	25.26
PGSC0003DMT400067452	Potato	plastid	26.91	24.5
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	31.27	15.25
PGSC0003DMT400065220	Potato	plastid	18.91	13.23

Protein Annotations

EntrezGene:102589998	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658
GO:GO:0009840	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0016043	GO:GO:0016787
GO:GO:0019538	UniProt:M1D7P8	HAMAP:MF_00444	PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG400033910	PGSC:PGSC0003DMG400033910
EnsemblPlants:PGSC0003DMT400084282	PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF8	MEROPS:S14.006
SUPFAM:SSF52096	UniParc:UPI000295EEB7	RefSeq:XP_006349607.1	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400033910]

Coordinates

chr10:-:44043922..44049792

Molecular Weight (calculated)

29580.7 Da

IEP (calculated)

8.575

GRAVY (calculated)

0.024

Length

275 amino acids

Sequence
(BLAST)

001: MVTSAIAGTS IVPVSFRHQT CSSSLLSSRS LRKHVVSVLR SPCSDSSAIG FSSKKLRIPL KFNEHESGAH TNSSYGVIVA KEGGNPPIMP AVMTPGGALD
101: LSTVLFRNRI IFIGQPVNSA VAQKVISQLV TLATIDENAD ILIYLNCPGG STYSVLAIYD CMSWIKPKVG TVCFGAAASQ GALLLAGGEK GMRYAMPNAR
201: IMIHQPQSGC GGHVEDVRRQ VNEAVQSRQK VDKMYAAFTG QPIEKIQAYT ERDRFMSSSE AMEFGLIDGV LETEY

Best Arabidopsis Sequence Match ( AT1G11750.1 )
(BLAST)

001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV
101: LFRNRIIFIG QPINAQVAQR VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL LAGGEKGMRY AMPNTRVMIH
201: QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE KVQQYTERDR FLSASEALEF GLIDGLLETE Y

Arabidopsis Description

CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.