Factsheet for PGSC0003DMT400055547

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007157
PGSC0003DMT400010010
PGSC0003DMT400010090
PGSC0003DMT400065220
PGSC0003DMT400067452
PGSC0003DMT400078756
PGSC0003DMT400079259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00670.1	PGSC0003DMT400007157	AT1G02560.1	14593120
ATCG00670.1	PGSC0003DMT400010090	AT1G12410.1	14593120
ATCG00670.1	PGSC0003DMT400065220	AT1G49970.1	14593120
ATCG00670.1	PGSC0003DMT400078756	AT1G66670.1	14593120
ATCG00670.1	PGSC0003DMT400010010	AT4G12060.1	14593120
ATCG00670.1	PGSC0003DMT400067452	AT4G17040.1	14593120
ATCG00670.1	PGSC0003DMT400079259	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	100.0	65.71
Solyc01g007490.2.1	Tomato	plastid	95.65	32.04
TraesCS1A01G111400.1	Wheat	cytosol	52.17	31.58
HORVU3Hr1G044750.2	Barley	cytosol	57.97	28.99
ATCG00670.1	Thale cress	cytosol	73.91	26.02
HORVU3Hr1G053800.1	Barley	endoplasmic reticulum	47.83	23.74
TraesCS5D01G009400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	65.22	22.39
TraesCS2D01G271200.1	Wheat	cytosol	63.77	22.22
HORVU0Hr1G027550.1	Barley	cytosol	68.12	21.76
HORVU5Hr1G065060.1	Barley	cytosol	68.12	21.76
HORVU7Hr1G065830.1	Barley	cytosol	68.12	21.76
TraesCS3D01G053300.1	Wheat	cytosol	66.67	21.3
TraesCS3B01G187300.1	Wheat	cytosol	66.67	21.3
GRMZM5G804708_P01	Maize	plastid	66.67	21.3
TraesCSU01G266900.1	Wheat	cytosol	55.07	20.99
HORVU0Hr1G029900.1	Barley	cytosol, peroxisome, plastid	65.22	20.83
AGP50779	Barley	cytosol, peroxisome, plastid	65.22	20.83
HORVU0Hr1G036940.1	Barley	cytosol, peroxisome, plastid	65.22	20.83
HORVU0Hr1G037900.1	Barley	cytosol, peroxisome, plastid	65.22	20.83
HORVU0Hr1G026150.1	Barley	cytosol, peroxisome, plastid	65.22	20.83
HORVU6Hr1G023010.1	Barley	cytosol, peroxisome, plastid	65.22	20.83
HORVU6Hr1G037220.1	Barley	cytosol, peroxisome, plastid	65.22	20.83
HORVU6Hr1G049380.1	Barley	cytosol, peroxisome, plastid	65.22	20.83
TraesCS1D01G182500.1	Wheat	cytosol, peroxisome, plastid	53.62	20.44
CAA33972	Rice	cytosol	63.77	20.37
TraesCS1D01G435100.1	Wheat	cytosol	63.77	20.37
PGSC0003DMT400082481	Potato	mitochondrion	49.28	14.41
PGSC0003DMT400027435	Potato	mitochondrion	49.28	14.29
TraesCS3A01G215600.1	Wheat	cytosol	34.78	13.04
PGSC0003DMT400084282	Potato	plastid	43.48	10.91
PGSC0003DMT400078756	Potato	plastid	49.28	10.83
PGSC0003DMT400010090	Potato	cytosol, plastid	42.03	10.03
PGSC0003DMT400079259	Potato	plastid	42.03	9.7
PGSC0003DMT400067452	Potato	plastid	37.68	8.61
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	46.38	5.67
PGSC0003DMT400065220	Potato	plastid	26.09	4.58

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_Ser_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	UniProt:M1BY47
PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG400021571	PGSC:PGSC0003DMG400021571	EnsemblPlants:PGSC0003DMT400055547	PRINTS:PR00127	ScanProsite:PS00381
PANTHER:PTHR10381	PANTHER:PTHR10381:SF19	SUPFAM:SSF52096	TMHMM:TMhelix	UniParc:UPI0002963304	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400021571]

Coordinates

chr9:+:5701627..5702180

Molecular Weight (calculated)

7694.4 Da

IEP (calculated)

6.502

GRAVY (calculated)

0.196

Length

69 amino acids

Sequence
(BLAST)

1: MEDENKELYL FVNSPGGWVI PGIAIYDTMQ FVRPDIHTIC IGLAASMGSF ILAGGQLTKR IAFPHAWRQ

Best Arabidopsis Sequence Match ( ATCG00670.1 )
(BLAST)

001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ

Arabidopsis Description

CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.