Factsheet for PGSC0003DMT400067452

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077890.2.1	Tomato	plastid	94.7	94.7
CDY71709	Canola	endoplasmic reticulum, extracellular	54.97	86.91
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	34.44	80.0
VIT_00s0204g00220.t01	Wine grape	plastid	72.85	75.34
KRH04225	Soybean	plastid	72.52	72.04
AT4G17040.1	Thale cress	plastid	71.52	70.82
KRH57519	Soybean	plastid	70.86	70.39
CDY09652	Canola	plastid	70.86	70.39
CDY42955	Canola	plastid	70.86	70.16
Bra012683.1-P	Field mustard	plastid	71.19	70.03
CDY35605	Canola	plastid	70.2	69.97
CDY09656	Canola	plastid	70.86	69.93
Bra040108.1-P	Field mustard	plastid	70.53	69.84
CDX90492	Canola	plastid	70.53	69.38
GSMUA_Achr9P24480_001	Banana	plastid	73.18	66.37
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	36.09	64.5
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	33.44	63.52
TraesCS3A01G187300.1	Wheat	plastid	59.6	63.16
TraesCS3B01G216800.1	Wheat	plastid	59.27	62.81
Zm00001d040322_P002	Maize	plastid	59.27	61.94
EES00561	Sorghum	plastid	59.6	61.86
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	60.93	61.74
HORVU3Hr1G038610.4	Barley	plastid	56.62	60.21
TraesCS3D01G191100.2	Wheat	plastid	59.27	57.19
CDY43468	Canola	plastid	27.48	47.16
PGSC0003DMT400055547	Potato	cytosol	8.61	37.68
PGSC0003DMT400027435	Potato	mitochondrion	26.49	33.61
PGSC0003DMT400082481	Potato	mitochondrion	25.5	32.63
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	10.93	31.43
PGSC0003DMT400084282	Potato	plastid	24.5	26.91
PGSC0003DMT400065220	Potato	plastid	33.77	25.95
PGSC0003DMT400079259	Potato	plastid	24.17	24.41
PGSC0003DMT400010090	Potato	cytosol, plastid	23.18	24.22
PGSC0003DMT400078756	Potato	plastid	23.51	22.61
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	25.83	13.83

Protein Annotations

EntrezGene:102591717	MapMan:19.4.2.9.2	Gene3D:3.90.226.10	ProteinID:AFX67013	ProteinID:AFX67013.1	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil	GO:GO:0000302	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009507	GO:GO:0009532
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0010468	GO:GO:0016787	GO:GO:0019538
EMBL:JX845306	UniProt:M1CH96	PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG401026219	PGSC:PGSC0003DMG401026219	EnsemblPlants:PGSC0003DMT400067452
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	MEROPS:S14.001	SUPFAM:SSF52096	UniParc:UPI0002959CB8
RefSeq:XP_006359215.1	RefSeq:XP_006359216.1	SEG:seg	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401026219]

Coordinates

chr8:+:51046056..51053458

Molecular Weight (calculated)

33129.8 Da

IEP (calculated)

8.386

GRAVY (calculated)

-0.156

Length

302 amino acids

Sequence
(BLAST)

001: MEAVTIASHF SPATGIRLSS PACCRASAPK RTLRFSPPTK SSLSTSFISP FVGGSLFSDL SGQRIRPDSL YPSSSTGFIP KRAVVTMVIP FSGDPSQEHP
101: PDLASYLFKN RIVYLGMSLV PSVTELILAE FLYLQYEDED KPIYLYINST GTTKGGEKLG YETEAFAVYD VMSYVKPPIF TLCVGNAWGE AALLLAAGAK
201: GNRAALPSST IMIKQPIAQF QGQATDVELM RKEVNNVKAE LVKLYSKNTG KSPEEIEEDI RRPKYFSPSE AVEYGIIDKV LYNERGNKDR GIVSDLKKAQ
301: LI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.