Factsheet for PGSC0003DMT400010090

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008728

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12410.1	PGSC0003DMT400008728	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079620.2.1	Tomato	plastid	94.81	94.81
VIT_02s0025g05140.t01	Wine grape	plastid	69.9	69.42
AT1G12410.1	Thale cress	plastid	66.09	68.46
CDY26563	Canola	plastid	65.74	68.35
CDX98066	Canola	plastid	65.74	68.1
Bra019764.1-P	Field mustard	plastid	65.4	67.74
CDY30078	Canola	plastid	64.71	67.03
CDY68541	Canola	cytosol	28.37	65.6
GSMUA_Achr1P08260_001	Banana	plastid	64.01	64.46
KRH57313	Soybean	endoplasmic reticulum, extracellular	66.78	61.86
KXG19238	Sorghum	plastid	60.21	59.59
Os06t0136800-01	Rice	plastid	59.17	57.58
TraesCS7D01G072100.1	Wheat	plastid	58.13	56.38
KRH04045	Soybean	mitochondrion	66.78	56.27
TraesCS7A01G076400.1	Wheat	plastid	58.13	56.0
CDY69283	Canola	plastid	39.1	53.81
Zm00001d045430_P002	Maize	plastid	60.21	53.7
TraesCS4A01G374600.2	Wheat	plastid	57.09	52.22
HORVU7Hr1G017670.1	Barley	plastid	58.13	52.17
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.4	48.34
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	15.57	42.86
PGSC0003DMT400055547	Potato	cytosol	10.03	42.03
CDY15997	Canola	plastid	65.74	38.93
PGSC0003DMT400027435	Potato	mitochondrion	24.91	30.25
PGSC0003DMT400082481	Potato	mitochondrion	23.18	28.39
PGSC0003DMT400084282	Potato	plastid	25.26	26.55
PGSC0003DMT400079259	Potato	plastid	27.34	26.42
PGSC0003DMT400078756	Potato	plastid	26.99	24.84
PGSC0003DMT400067452	Potato	plastid	24.22	23.18
PGSC0003DMT400065220	Potato	plastid	25.26	18.58
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	27.34	14.01

Protein Annotations

EntrezGene:102604367	MapMan:19.4.2.8.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	UniProt:M0ZXG5	HAMAP:MF_00444	PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG400003952
PGSC:PGSC0003DMG400003952	EnsemblPlants:PGSC0003DMT400010090	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF15	MEROPS:S14.001
SUPFAM:SSF52096	UniParc:UPI000296502A	RefSeq:XP_006363720.1	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400003952]

Coordinates

chr8:+:53313962..53319704

Molecular Weight (calculated)

31836.2 Da

IEP (calculated)

9.035

GRAVY (calculated)

-0.253

Length

289 amino acids

Sequence
(BLAST)

001: MAVALPTTSS SYLHSKTKIP KSSLSCASKV YVGLRIQSPG SYGVATSNLN VDFFSRVHKS IESGTKDGKA TRAQVTMMPI GTPKVPYRNP TDSSWQWVDL
101: WNALYRERVI FIGEEINEEF SNQILATMLY LDSIDSSKKL YMFINGPGGD LTPTMAIYDT MQSLKCAVGT HCVGFAYNLA AFLLAAGEKG NRCAMPLSRI
201: ALESPAGAAR GQADDIRNEA EELLRIRNYL FKELSEKTGQ PIEKVHKDLS RVKRFTAKEA LEYGLIDRIV RPSRIDGDAP PRDITAGLG

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.