Factsheet for Bra019764.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003986.1-P
Bra004407.1-P
Bra007875.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12410.1	Bra003986.1-P	AT1G69690.1	21798944
AT1G12410.1	Bra004407.1-P	AT1G69690.1	21798944
AT1G12410.1	Bra007875.1-P	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98066	Canola	plastid	99.28	99.28
CDY30078	Canola	plastid	98.57	98.57
AT1G12410.1	Thale cress	plastid	94.27	94.27
VIT_02s0025g05140.t01	Wine grape	plastid	70.25	67.35
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	93.91	67.01
Solyc08g079620.2.1	Tomato	plastid	68.1	65.74
PGSC0003DMT400010090	Potato	cytosol, plastid	67.74	65.4
GSMUA_Achr1P08260_001	Banana	plastid	66.67	64.81
KRH57313	Soybean	endoplasmic reticulum, extracellular	70.97	63.46
KRH04045	Soybean	mitochondrion	70.61	57.43
KXG19238	Sorghum	plastid	58.78	56.16
Os06t0136800-01	Rice	plastid	58.06	54.55
TraesCS7D01G072100.1	Wheat	plastid	57.35	53.69
TraesCS7A01G076400.1	Wheat	plastid	57.35	53.33
Zm00001d045430_P002	Maize	plastid	58.78	50.62
HORVU7Hr1G017670.1	Barley	plastid	57.71	50.0
TraesCS4A01G374600.2	Wheat	plastid	56.27	49.68
Bra009331.1-P	Field mustard	mitochondrion	27.96	32.77
Bra013020.1-P	Field mustard	mitochondrion	25.45	30.21
Bra033332.1-P	Field mustard	plastid	31.54	29.93
Bra030504.1-P	Field mustard	plastid	31.54	29.43
Bra016816.1-P	Field mustard	plastid	26.16	27.04
Bra031777.1-P	Field mustard	plastid	25.81	26.37
Bra025079.1-P	Field mustard	plastid	26.52	25.69
Bra040108.1-P	Field mustard	plastid	25.81	23.61
Bra012683.1-P	Field mustard	plastid	25.81	23.45
Bra004177.1-P	Field mustard	plastid	25.09	22.36
Bra030756.1-P	Field mustard	plastid	25.09	21.67
Bra014229.1-P	Field mustard	plastid	26.52	19.07

Protein Annotations

MapMan:19.4.2.8.1	Gene3D:3.90.226.10	EnsemblPlantsGene:Bra019764	EnsemblPlants:Bra019764.1	EnsemblPlants:Bra019764.1-P	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:M4DTC1	HAMAP:MF_00444
PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF15	SUPFAM:SSF52096	UniParc:UPI000253ECEC

Description

AT1G12410 (E=4e-152) CLPR2, NCLPP2, CLP2 | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase

Coordinates

chrA06:-:4552627..4554175

Molecular Weight (calculated)

31218.4 Da

IEP (calculated)

9.382

GRAVY (calculated)

-0.414

Length

279 amino acids

Sequence
(BLAST)

001: MAVSFNTTLH QSSLSPCCSI KLYSGLKPQS SSFLTNGYQN LNKEFYGRIH KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG QRFAMPLSRI ALTSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PVETIFKDLS RVKRFNAEEA MEYGLIDKIV RPPRIKADAP RQDETSGLG

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.