Factsheet for Bra007875.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000626.1-P
Bra004644.1-P
Bra004645.1-P
Bra010501.1-P
Bra010881.1-P
Bra011662.1-P
Bra012471.1-P
Bra013635.1-P
Bra013844.1-P
Bra017747.1-P
Bra018343.1-P
Bra018774.1-P
Bra018956.1-P
Bra020704.1-P
Bra020834.1-P
Bra021603.1-P
Bra021765.1-P
Bra022523.1-P
Bra022774.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P
Bra030094.1-P
Bra030396.1-P
Bra032056.1-P
Bra032421.1-P
Bra032898.1-P
Bra036176.1-P
Bra037488.1-P
Bra037489.1-P
Bra040595.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69690.1	Bra032421.1-P	AT1G06450.1	21798944
AT1G69690.1	Bra012471.1-P	AT1G25550.1	21798944
AT1G69690.1	Bra010881.1-P	AT1G28360.1	21798944
AT1G69690.1	Bra030094.1-P	AT1G28360.1	21798944
AT1G69690.1	Bra032898.1-P	AT1G28360.1	21798944
AT1G69690.1	Bra018774.1-P	AT1G49030.1	21798944
AT1G69690.1	Bra018956.1-P	AT1G52240.1	21798944
AT1G69690.1	Bra030396.1-P	AT1G52240.1	21798944
AT1G69690.1	Bra032056.1-P	AT2G24860.1	21798944
AT1G69690.1	Bra018343.1-P	AT2G30050.1	21798944
AT1G69690.1	Bra021603.1-P	AT2G30050.1	21798944
AT1G69690.1	Bra022774.1-P	AT2G30050.1	21798944
AT1G69690.1	Bra021765.1-P	AT2G31985.1	21798944
AT1G69690.1	Bra004644.1-P	AT2G41730.1	21798944
AT1G69690.1	Bra004645.1-P	AT2G41730.1	21798944
AT1G69690.1	Bra040595.1-P	AT4G14980.1	21798944
AT1G69690.1	Bra013635.1-P	AT4G22720.1	21798944
AT1G69690.1	Bra020834.1-P	AT4G22720.1	21798944
AT1G69690.1	Bra013844.1-P	AT4G24900.1	21798944
AT1G69690.1	Bra010501.1-P	AT4G36110.1	21798944
AT1G69690.1	Bra011662.1-P	AT4G36110.1	21798944
AT1G69690.1	Bra017747.1-P	AT4G36110.1	21798944
AT1G69690.1	Bra025431.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra028174.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra028181.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra028406.1-P	AT5G38420.1	21798944
AT1G69690.1	Bra020704.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra036176.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra037488.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra037489.1-P	AT5G48385.1	21798944
AT1G69690.1	Bra000626.1-P	AT5G50600.1	21798944
AT1G69690.1	Bra022523.1-P	AT5G50600.1	21798944
AT1G69690.1	Bra000626.1-P	AT5G50700.1	21798944
AT1G69690.1	Bra022523.1-P	AT5G50700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28577	Canola	cytosol	97.56	98.77
Bra003986.1-P	Field mustard	cytosol	91.06	91.43
CDY28576	Canola	nucleus	97.56	75.47
Bra004407.1-P	Field mustard	nucleus, plastid	88.21	67.6
AT1G69690.1	Thale cress	nucleus, plastid	87.8	66.46
VIT_01s0026g02200.t01	Wine grape	nucleus	50.0	34.84
Bra029366.1-P	Field mustard	cytosol	24.39	34.09
KRH45889	Soybean	nucleus	36.59	31.47
KRG99108	Soybean	nucleus	32.93	29.67
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	24.39	27.78
Bra009338.1-P	Field mustard	nucleus	25.2	26.27
Bra028662.1-P	Field mustard	nucleus	24.39	26.2
Bra005984.1-P	Field mustard	nucleus	23.98	25.21
Bra009667.1-P	Field mustard	nucleus	25.61	25.2
PGSC0003DMT400008728	Potato	nucleus	37.4	24.8
Solyc05g007420.1.1	Tomato	nucleus	37.8	24.28
Bra025528.1-P	Field mustard	nucleus	21.95	24.11
Bra018126.1-P	Field mustard	nucleus	44.31	23.39
Bra027886.1-P	Field mustard	nucleus, plastid	34.96	21.83
Bra016090.1-P	Field mustard	nucleus	30.49	21.07
Bra039096.1-P	Field mustard	nucleus	23.58	20.86
Bra025244.1-P	Field mustard	nucleus	26.02	20.85
Bra008001.1-P	Field mustard	nucleus, plastid	29.27	19.25
Bra022568.1-P	Field mustard	cytosol	23.17	19.19
Bra000395.1-P	Field mustard	nucleus	23.58	18.65
Bra004929.1-P	Field mustard	nucleus	23.17	17.59

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra007875	EnsemblPlants:Bra007875.1	EnsemblPlants:Bra007875.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4CUI0	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF40	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002546872	SEG:seg	:

Description

AT1G69690 (E=3e-087) | TCP family transcription factor, putative

Coordinates

chrA02:+:11476440..11477180

Molecular Weight (calculated)

25666.4 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.522

Length

246 amino acids

Sequence
(BLAST)

001: MPAMCPARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFA SLNISLRSSR SSLSAAHLRT APSSYYFHSP TMAHPHQVRP KHESHSSSSS
101: QLLDHNQMGN YLVQSTAGSL PTSQTPTTAP FWSSGDSTQN LWAFNINPHH SGEVYNTSGG GGGGGGGGGA GGGGVHLMNF AAPIALFSGQ PLASGYGGGG
201: GDHNHYGVLA ALNAAYRPVQ ETASQQNREG DHHHSHQEDG STSHHS

Best Arabidopsis Sequence Match ( AT1G69690.1 )
(BLAST)

001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS

Arabidopsis Description

TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.