Factsheet for Bra004645.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004330.1-P
Bra018126.1-P
Bra038360.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41730.1	Bra004330.1-P	AT1G68670.1	21798944
AT2G41730.1	Bra038360.1-P	AT1G68670.1	21798944
AT2G41730.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79918	Canola	nucleus	99.23	99.23
Bra004644.1-P	Field mustard	nucleus, plastid	64.62	65.62
AT2G41730.1	Thale cress	mitochondrion	60.0	65.55
AT5G24640.1	Thale cress	nucleus	54.62	60.17
GSMUA_Achr6P28310_001	Banana	mitochondrion	35.38	29.87
Bra025553.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	43.85	25.22

Protein Annotations

EnsemblPlants:Bra004645.1	EnsemblPlants:Bra004645.1-P	EnsemblPlantsGene:Bra004645	PANTHER:PTHR34278	PANTHER:PTHR34278:SF1	SEG:seg
UniParc:UPI0002547795	UniProt:M4CKB0	MapMan:35.2	:	:	:

Description

AT2G41730 (E=1e-039) | unknown protein

Coordinates

chrA05:+:1200406..1200798

Molecular Weight (calculated)

14391.6 Da

IEP (calculated)

8.276

GRAVY (calculated)

-1.136

Length

130 amino acids

Sequence
(BLAST)

001: MKKEGHQHGF VRTGMIHPPG FSPRPSNQFM NRLDSPPASG EHTKVPSKPT HHSKFTGKHE RSKYSNCHVL PAMKSADTSK GRQKLKSTDW WVDDKLDRLT
101: GSGASSARDI LDTIGGEGYG GHDYDDDDDC

Best Arabidopsis Sequence Match ( AT2G41730.1 )
(BLAST)

001: MKSEGRHQGI VRTGMIHPRG FNPRPTSNRL DSPPAFGDFT KVPSKTTNHS NTTGESERSK YSHCHVSPAI KSGHKSKGRR KLQPTSWWSE DKLDRLIGSD
101: SSSAKDILDT LCGEDHDEH

Arabidopsis Description

Calcium-binding site protein [Source:UniProtKB/TrEMBL;Acc:O22947]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.