Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 2
  • plasma membrane 1
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004330.1-P
Bra018126.1-P
Bra038360.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G41730.1 Bra004330.1-P AT1G68670.1 21798944
AT2G41730.1 Bra038360.1-P AT1G68670.1 21798944
AT2G41730.1 Bra018126.1-P AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX79919 Canola nucleus, plastid 100.0 100.0
AT2G41730.1 Thale cress mitochondrion 60.94 65.55
Bra004645.1-P Field mustard nucleus 65.62 64.62
AT5G24640.1 Thale cress nucleus 56.25 61.02
GSMUA_Achr6P28310_001 Banana mitochondrion 34.38 28.57
Bra025553.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 43.75 24.78
Protein Annotations
EnsemblPlants:Bra004644.1EnsemblPlants:Bra004644.1-PEnsemblPlantsGene:Bra004644PANTHER:PTHR34278PANTHER:PTHR34278:SF1SEG:seg
UniParc:UPI0002547794UniProt:M4CKA9MapMan:35.2:::
Description
AT2G41730 (E=8e-034) | unknown protein
Coordinates
chrA05:+:1198585..1198971
Molecular Weight (calculated)
14204.7 Da
IEP (calculated)
9.744
GRAVY (calculated)
-0.808
Length
128 amino acids
Sequence
(BLAST)
001: MKREGRQHSF VRTGMIHQSG FNPSPSNKFV NRLDSPPAFG VFTKVPSKPT NHSKSTRKCE RAKYSKCHVS PAMKSAVTSK GGQKLKSTDW WVEGKLNQLI
101: GSDSSSTSDI LDTLCGEDYS GHVYDYDC
Best Arabidopsis Sequence Match ( AT2G41730.1 )
(BLAST)
001: MKSEGRHQGI VRTGMIHPRG FNPRPTSNRL DSPPAFGDFT KVPSKTTNHS NTTGESERSK YSHCHVSPAI KSGHKSKGRR KLQPTSWWSE DKLDRLIGSD
101: SSSAKDILDT LCGEDHDEH
Arabidopsis Description
Calcium-binding site protein [Source:UniProtKB/TrEMBL;Acc:O22947]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.