Factsheet for Bra025553.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36373	Canola	cytosol, mitochondrion, nucleus, plastid	84.96	90.14
CDY42559	Canola	cytosol	83.19	88.26
AT5G40690.1	Thale cress	plastid	76.11	81.9
KRG88946	Soybean	cytosol, mitochondrion, peroxisome, plastid	21.68	50.52
Solyc02g067940.1.1	Tomato	cytosol, plastid	20.8	48.96
KRH72087	Soybean	plastid	35.84	47.93
PGSC0003DMT400017820	Potato	cytosol	26.11	47.58
Solyc02g093710.1.1	Tomato	mitochondrion	38.5	45.55
PGSC0003DMT400032865	Potato	cytosol	38.05	44.79
Bra004645.1-P	Field mustard	nucleus	25.22	43.85
Bra004644.1-P	Field mustard	nucleus, plastid	24.78	43.75
VIT_14s0219g00110.t01	Wine grape	nucleus	40.27	41.74
GSMUA_Achr3P17090_001	Banana	cytosol	30.53	33.82
GSMUA_Achr6P28320_001	Banana	cytosol, mitochondrion, nucleus, plastid	30.09	33.17
Zm00001d036468_P001	Maize	nucleus	24.78	26.17
Zm00001d036465_P001	Maize	nucleus	24.78	26.17
EER90325	Sorghum	cytosol, mitochondrion	25.22	23.65
TraesCS3A01G516300.1	Wheat	mitochondrion	22.57	21.43
TraesCSU01G053700.1	Wheat	mitochondrion	22.57	21.34
TraesCS3D01G524000.1	Wheat	mitochondrion	22.12	21.1
HORVU4Hr1G000630.1	Barley	mitochondrion	11.5	16.99
HORVU5Hr1G017320.1	Barley	plastid	12.83	16.11
HORVU3Hr1G113050.1	Barley	cytosol, mitochondrion, nucleus	22.12	13.7
HORVU0Hr1G018980.1	Barley	cytosol, mitochondrion	10.18	11.79
HORVU5Hr1G072670.2	Barley	cytosol	6.64	7.69
HORVU2Hr1G123290.3	Barley	extracellular	7.52	7.14

Protein Annotations

EnsemblPlants:Bra025553.1	EnsemblPlants:Bra025553.1-P	EnsemblPlantsGene:Bra025553	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	PANTHER:PTHR34278	PANTHER:PTHR34278:SF1	SEG:seg	UniParc:UPI0002544EE2
UniProt:M4E9U7	MapMan:35.2	:	:	:	:

Description

AT5G40690 (E=2e-069) | INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 208 Blast hits to 177 proteins in 46 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 25; Plants - 42; Viruses - 6; Other Eukaryotes - 80 (source: NCBI BLink).

Coordinates

chrA04:+:7924410..7925090

Molecular Weight (calculated)

25307.4 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.808

Length

226 amino acids

Sequence
(BLAST)

001: MKREGKQHGM VRTYRILPPS LNPRPEAKLV NPLTCRPTAG LFTKVSSKPT NHSKFTGKCG QARCLECHMH PITKSKVKSK GSSKVRSNDV TYKMLTWQVA
101: SGGHRPGLKL SGFSATGLLD LMSDDYGYDH DYQSDEEEEE EEYIGSVVEE IVDIQSDDDD DDDDDGEKGE DVSHDDSEKE EYGSPVAAAD DDGRMSFCDV
201: GVMMMMMDHV EEFDEEGWCL VEEMMT

Best Arabidopsis Sequence Match ( AT5G40690.1 )
(BLAST)

001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT

Arabidopsis Description

At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.