CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036468_P001	Maize	nucleus	56.02	63.08
Zm00001d036465_P001	Maize	nucleus	56.02	63.08
TraesCS3A01G516300.1	Wheat	mitochondrion	49.38	50.0
TraesCS3D01G524000.1	Wheat	mitochondrion	48.96	49.79
TraesCSU01G053700.1	Wheat	mitochondrion	48.96	49.37
GSMUA_Achr6P28320_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.34	43.9
HORVU4Hr1G000630.1	Barley	mitochondrion	26.56	41.83
PGSC0003DMT400017820	Potato	cytosol	20.75	40.32
GSMUA_Achr3P17090_001	Banana	cytosol	31.95	37.75
Solyc02g067940.1.1	Tomato	cytosol, plastid	13.69	34.38
Solyc02g093710.1.1	Tomato	mitochondrion	26.56	33.51
KRG88946	Soybean	cytosol, mitochondrion, peroxisome, plastid	13.28	32.99
KRH72087	Soybean	plastid	22.82	32.54
PGSC0003DMT400032865	Potato	cytosol	25.73	32.29
VIT_14s0219g00110.t01	Wine grape	nucleus	24.9	27.52
CDY36373	Canola	cytosol, mitochondrion, nucleus, plastid	24.07	27.23
AT5G40690.1	Thale cress	plastid	23.65	27.14
CDY42559	Canola	cytosol	22.41	25.35
Bra025553.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	23.65	25.22
HORVU5Hr1G017320.1	Barley	plastid	18.67	25.0
HORVU2Hr1G123290.3	Barley	extracellular	23.24	23.53
HORVU0Hr1G018980.1	Barley	cytosol, mitochondrion	18.67	23.08
HORVU5Hr1G072670.2	Barley	cytosol	15.35	18.97

Protein Annotations

EnsemblPlants:EER90325	EnsemblPlantsGene:SORBI_3010G251400	EntrezGene:8063832	PANTHER:PTHR34278	PANTHER:PTHR34278:SF1	ProteinID:EER90325
ProteinID:EER90325.1	RefSeq:XP_002438958.1	SEG:seg	unigene:Sbi.6917	UniParc:UPI0001A897B6	UniProt:C5Z966
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:59084506..59091185

Molecular Weight (calculated)

25483.2 Da

IEP (calculated)

4.437

GRAVY (calculated)

-0.577

Length

241 amino acids

Sequence
(BLAST)

001: MKREGRQHGT VRISRSKVLK TTADADADAE SAAAVAFALA ATEKKAAAGK PTNASRSTGK CRRPRCAGCH AHPVTKARDK AKGAHKLRAC DVALNHRLVS
101: WRVVDDQGSG VPEYRGKSAS SLLAYLAGGS GNSWHEDDDD TSEGGIGAPE AGLSDLYDLF VGRRADAEAE ADPDPAARDT DLDDVGEIQA IGEPGLLLDG
201: DDGKEDGDEK EEEDMGFCMV GITIAVEFSD GEEDWIVVEE V

Best Arabidopsis Sequence Match ( AT5G40690.1 )
(BLAST)

001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT

Arabidopsis Description

At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.