Factsheet for VIT_14s0219g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88946	Soybean	cytosol, mitochondrion, peroxisome, plastid	26.15	58.76
PGSC0003DMT400017820	Potato	cytosol	30.28	53.23
Solyc02g093710.1.1	Tomato	mitochondrion	45.41	51.83
PGSC0003DMT400032865	Potato	cytosol	44.5	50.52
KRH72087	Soybean	plastid	38.99	50.3
Solyc02g067940.1.1	Tomato	cytosol, plastid	22.02	50.0
AT5G40690.1	Thale cress	plastid	43.12	44.76
CDY36373	Canola	cytosol, mitochondrion, nucleus, plastid	41.74	42.72
CDY42559	Canola	cytosol	40.37	41.31
Bra025553.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.74	40.27
GSMUA_Achr6P28320_001	Banana	cytosol, mitochondrion, nucleus, plastid	34.4	36.59
GSMUA_Achr3P17090_001	Banana	cytosol	32.11	34.31
Zm00001d036468_P001	Maize	nucleus	27.52	28.04
Zm00001d036465_P001	Maize	nucleus	27.52	28.04
TraesCS3D01G524000.1	Wheat	mitochondrion	29.36	27.0
TraesCS3A01G516300.1	Wheat	mitochondrion	28.44	26.05
TraesCSU01G053700.1	Wheat	mitochondrion	28.44	25.94
EER90325	Sorghum	cytosol, mitochondrion	27.52	24.9
HORVU4Hr1G000630.1	Barley	mitochondrion	15.14	21.57
HORVU5Hr1G017320.1	Barley	plastid	17.43	21.11
HORVU3Hr1G113050.1	Barley	cytosol, mitochondrion, nucleus	28.44	16.99
HORVU0Hr1G018980.1	Barley	cytosol, mitochondrion	15.14	16.92
HORVU5Hr1G072670.2	Barley	cytosol	11.01	12.31
HORVU2Hr1G123290.3	Barley	extracellular	13.3	12.18

Protein Annotations

ArrayExpress:VIT_14s0219g00110	EMBL:FN594962	EnsemblPlants:VIT_14s0219g00110.t01	EnsemblPlantsGene:VIT_14s0219g00110	EntrezGene:100256024	EntrezGene:LOC100256024
PANTHER:PTHR34278	PANTHER:PTHR34278:SF1	ProteinID:CCB44547	ProteinID:CCB44547.1	RefSeq:XP_002268221	RefSeq:XP_002268221.1
SEG:seg	TIGR:TC68186	unigene:Vvi.24665	UniParc:UPI00015C99A9	UniProt:F6GX61	wikigene:100256024
wikigene:LOC100256024	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr14:-:26398055..26398943

Molecular Weight (calculated)

24813.6 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.930

Length

218 amino acids

Sequence
(BLAST)

001: MKREGRQHGM VRSYRILPPP WNPNSQERFV NRFDSPPTAG VFTKVSSKPT NHSKFTGACC RTKCLDCHLL PACKSKGKTK GTQKMKPRDM VSNHRLITWR
101: LVEGKPGLNF NGISATEVLD HLSREDFYDD QYYNDEDEDE VEACYDGHYD EEKIEDSGHA CPDDGPMAEE KEIEAGGIQI SGESDECDVD DDDNSFYEVG
201: FVWEQVDGDE GWCLVREM

Best Arabidopsis Sequence Match ( AT5G40690.1 )
(BLAST)

001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT

Arabidopsis Description

At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.