CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36373	Canola	cytosol, mitochondrion, nucleus, plastid	85.92	85.92
Bra025553.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	88.26	83.19
AT5G40690.1	Thale cress	plastid	78.4	79.52
KRG88946	Soybean	cytosol, mitochondrion, peroxisome, plastid	23.0	50.52
Solyc02g067940.1.1	Tomato	cytosol, plastid	22.54	50.0
PGSC0003DMT400017820	Potato	cytosol	28.17	48.39
Solyc02g093710.1.1	Tomato	mitochondrion	41.31	46.07
KRH72087	Soybean	plastid	36.15	45.56
CDX79919	Canola	nucleus, plastid	27.23	45.31
PGSC0003DMT400032865	Potato	cytosol	40.38	44.79
CDY23829	Canola	mitochondrion	27.23	44.62
CDY23827	Canola	nucleus, plastid	26.76	43.85
CDX79918	Canola	nucleus	26.76	43.85
CDY23828	Canola	nucleus, plastid	25.35	41.54
VIT_14s0219g00110.t01	Wine grape	nucleus	41.31	40.37
GSMUA_Achr3P17090_001	Banana	cytosol	31.92	33.33
GSMUA_Achr6P28320_001	Banana	cytosol, mitochondrion, nucleus, plastid	31.46	32.68
Zm00001d036465_P001	Maize	nucleus	25.35	25.23
Zm00001d036468_P001	Maize	nucleus	25.35	25.23
EER90325	Sorghum	cytosol, mitochondrion	25.35	22.41
TraesCS3A01G516300.1	Wheat	mitochondrion	23.47	21.01
TraesCS3D01G524000.1	Wheat	mitochondrion	22.54	20.25
TraesCSU01G053700.1	Wheat	mitochondrion	22.54	20.08
HORVU5Hr1G017320.1	Barley	plastid	11.27	13.33
HORVU4Hr1G000630.1	Barley	mitochondrion	9.39	13.07
HORVU3Hr1G113050.1	Barley	cytosol, mitochondrion, nucleus	21.6	12.6
HORVU0Hr1G018980.1	Barley	cytosol, mitochondrion	8.92	9.74
HORVU2Hr1G123290.3	Barley	extracellular	6.57	5.88
HORVU5Hr1G072670.2	Barley	cytosol	4.69	5.13

Protein Annotations

EnsemblPlants:CDY42559	EnsemblPlantsGene:GSBRNA2T00075046001	InterPro:EF_Hand_1_Ca_BS	PANTHER:PTHR34278	PANTHER:PTHR34278:SF1	ProteinID:CDY42559
ProteinID:CDY42559.1	ScanProsite:PS00018	SEG:seg	UniParc:UPI0004EE98D5	UniProt:A0A078HZ26	MapMan:35.2

Description

BnaA04g10540DBnaA04g10540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ26]

Coordinates

chrLK032529:-:51179..51933

Molecular Weight (calculated)

24044.5 Da

IEP (calculated)

4.827

GRAVY (calculated)

-0.677

Length

213 amino acids

Sequence
(BLAST)

001: MKREGKQHGM VRTYRILPPL LNPRPEAKLV NPLTCRPTAG LFTKVSSKPT NHSKFTGKCG QARCLECHMH PITKSKVKSK GSSKVRSNDV TYKMLTWQVA
101: SGGHRPGLKL SGFSATGLLD LMSDDYGYDH DYESDEEEEE YKGCVVEEIV NIQKDVSHDD SEKELYGSPV ADDDDDDDGR MSFCDVGVMM MMMMDHVEEF
201: DEEGWCLVEE MMT

Best Arabidopsis Sequence Match ( AT5G40690.1 )
(BLAST)

001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT

Arabidopsis Description

At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.