CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42559	Canola	cytosol	85.92	85.92
Bra025553.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	90.14	84.96
AT5G40690.1	Thale cress	plastid	77.0	78.1
KRG88946	Soybean	cytosol, mitochondrion, peroxisome, plastid	23.0	50.52
Solyc02g067940.1.1	Tomato	cytosol, plastid	22.07	48.96
KRH72087	Soybean	plastid	38.03	47.93
PGSC0003DMT400017820	Potato	cytosol	27.7	47.58
Solyc02g093710.1.1	Tomato	mitochondrion	40.85	45.55
PGSC0003DMT400032865	Potato	cytosol	40.38	44.79
CDX79919	Canola	nucleus, plastid	26.76	44.53
CDY23829	Canola	mitochondrion	26.76	43.85
CDY23827	Canola	nucleus, plastid	26.29	43.08
CDX79918	Canola	nucleus	26.29	43.08
VIT_14s0219g00110.t01	Wine grape	nucleus	42.72	41.74
CDY23828	Canola	nucleus, plastid	25.35	41.54
GSMUA_Achr3P17090_001	Banana	cytosol	32.86	34.31
GSMUA_Achr6P28320_001	Banana	cytosol, mitochondrion, nucleus, plastid	31.92	33.17
Zm00001d036465_P001	Maize	nucleus	27.23	27.1
Zm00001d036468_P001	Maize	nucleus	27.23	27.1
EER90325	Sorghum	cytosol, mitochondrion	27.23	24.07
TraesCS3A01G516300.1	Wheat	mitochondrion	24.88	22.27
TraesCSU01G053700.1	Wheat	mitochondrion	24.88	22.18
TraesCS3D01G524000.1	Wheat	mitochondrion	23.47	21.1
HORVU5Hr1G017320.1	Barley	plastid	12.21	14.44
HORVU4Hr1G000630.1	Barley	mitochondrion	9.86	13.73
HORVU3Hr1G113050.1	Barley	cytosol, mitochondrion, nucleus	23.0	13.42
HORVU0Hr1G018980.1	Barley	cytosol, mitochondrion	10.8	11.79
HORVU5Hr1G072670.2	Barley	cytosol	5.16	5.64
HORVU2Hr1G123290.3	Barley	extracellular	6.1	5.46

Protein Annotations

EnsemblPlants:CDY36373	EnsemblPlantsGene:GSBRNA2T00060416001	PANTHER:PTHR34278	PANTHER:PTHR34278:SF1	ProteinID:CDY36373	ProteinID:CDY36373.1
SEG:seg	UniParc:UPI0004EED9CB	UniProt:A0A078HHW4	MapMan:35.2	:	:

Description

BnaC04g32810DBnaC04g32810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHW4]

Coordinates

chrLK032374:+:208873..209742

Molecular Weight (calculated)

24000.0 Da

IEP (calculated)

4.382

GRAVY (calculated)

-0.773

Length

213 amino acids

Sequence
(BLAST)

001: MKREGKQHGM VRTYRILPPS LNPRPEAKLV NPLTCRPTAG LFTKVSSKPT NHSKFTGKCG QARCLECHMH PITKSKVKSK GSSKVRSNDV TYKMLTWQVA
101: SGGHRPGLKL SGFSATGLLD LMSDDYGYDH DYESDEEEEE EEEYKGYVVE EIVNIQSDDD DDDDDDEYGS PVAAADDDDG RMSFCDVGVM MMMMDHVEEF
201: DEEGWCLVEE MMT

Best Arabidopsis Sequence Match ( AT5G40690.1 )
(BLAST)

001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT

Arabidopsis Description

At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.