Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42559 | Canola | cytosol | 79.52 | 78.4 |
| CDY36373 | Canola | cytosol, mitochondrion, nucleus, plastid | 78.1 | 77.0 |
| Bra025553.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 81.9 | 76.11 |
| Solyc02g067940.1.1 | Tomato | cytosol, plastid | 23.81 | 52.08 |
| KRG88946 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 23.81 | 51.55 |
| PGSC0003DMT400017820 | Potato | cytosol | 29.52 | 50.0 |
| Solyc02g093710.1.1 | Tomato | mitochondrion | 44.29 | 48.69 |
| PGSC0003DMT400032865 | Potato | cytosol | 43.81 | 47.92 |
| KRH72087 | Soybean | plastid | 38.1 | 47.34 |
| VIT_14s0219g00110.t01 | Wine grape | nucleus | 44.76 | 43.12 |
| AT2G41730.1 | Thale cress | mitochondrion | 23.81 | 42.02 |
| AT5G24640.1 | Thale cress | nucleus | 21.9 | 38.98 |
| GSMUA_Achr3P17090_001 | Banana | cytosol | 33.33 | 34.31 |
| GSMUA_Achr6P28320_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 32.86 | 33.66 |
| Zm00001d036468_P001 | Maize | nucleus | 26.19 | 25.7 |
| Zm00001d036465_P001 | Maize | nucleus | 26.19 | 25.7 |
| EER90325 | Sorghum | cytosol, mitochondrion | 27.14 | 23.65 |
| TraesCS3D01G524000.1 | Wheat | mitochondrion | 23.81 | 21.1 |
| TraesCS3A01G516300.1 | Wheat | mitochondrion | 23.81 | 21.01 |
| TraesCSU01G053700.1 | Wheat | mitochondrion | 23.33 | 20.5 |
| HORVU4Hr1G000630.1 | Barley | mitochondrion | 11.43 | 15.69 |
| HORVU5Hr1G017320.1 | Barley | plastid | 13.33 | 15.56 |
| HORVU3Hr1G113050.1 | Barley | cytosol, mitochondrion, nucleus | 23.33 | 13.42 |
| HORVU0Hr1G018980.1 | Barley | cytosol, mitochondrion | 8.57 | 9.23 |
| HORVU2Hr1G123290.3 | Barley | extracellular | 7.62 | 6.72 |
| HORVU5Hr1G072670.2 | Barley | cytosol | 6.19 | 6.67 |
Protein Annotations
| MapMan:35.2 | EntrezGene:834069 | ProteinID:AED94582.1 | ArrayExpress:AT5G40690 | EnsemblPlantsGene:AT5G40690 | RefSeq:AT5G40690 |
| TAIR:AT5G40690 | RefSeq:AT5G40690-TAIR-G | EnsemblPlants:AT5G40690.1 | TAIR:AT5G40690.1 | ProteinID:BAB08541.1 | EMBL:BT025272 |
| InterPro:EF_Hand_1_Ca_BS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016740 |
| GO:GO:0032259 | RefSeq:NP_198885.1 | PO:PO:0000013 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00018 | PANTHER:PTHR34278 | PANTHER:PTHR34278:SF1 | UniProt:Q9FM29 | UniParc:UPI000009C613 |
| SEG:seg | : | : | : | : | : |
Description
At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
Coordinates
chr5:+:16290386..16291713
Molecular Weight (calculated)
23571.4 Da
IEP (calculated)
4.438
GRAVY (calculated)
-0.902
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.