Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G41730.1 | Thale cress | mitochondrion | 88.98 | 88.24 |
| CDY23829 | Canola | mitochondrion | 68.64 | 62.31 |
| Bra004644.1-P | Field mustard | nucleus, plastid | 61.02 | 56.25 |
| CDX79919 | Canola | nucleus, plastid | 61.02 | 56.25 |
| Bra004645.1-P | Field mustard | nucleus | 60.17 | 54.62 |
| CDY23828 | Canola | nucleus, plastid | 60.17 | 54.62 |
| CDX79918 | Canola | nucleus | 59.32 | 53.85 |
| CDY23827 | Canola | nucleus, plastid | 58.47 | 53.08 |
| GSMUA_Achr6P28310_001 | Banana | mitochondrion | 30.51 | 23.38 |
| AT5G40690.1 | Thale cress | plastid | 38.98 | 21.9 |
Protein Annotations
| ArrayExpress:AT5G24640 | EMBL:AY128306 | EMBL:BT001164 | EnsemblPlants:AT5G24640.1 | EnsemblPlantsGene:AT5G24640 | EntrezGene:832535 |
| GO:GO:0008150 | PANTHER:PTHR34278 | PANTHER:PTHR34278:SF1 | PO:PO:0000293 | ProteinID:AED93343.1 | ProteinID:BAB11216.1 |
| ProteinID:OAO89898.1 | RefSeq:AT5G24640 | RefSeq:AT5G24640-TAIR-G | RefSeq:NP_197852.1 | TAIR:AT5G24640 | TAIR:AT5G24640.1 |
| Unigene:At.30948 | UniParc:UPI00000AC23D | UniProt:A0A178U7J1 | UniProt:Q9FLU0 | MapMan:35.2 | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLU0]
Coordinates
chr5:+:8436352..8436895
Molecular Weight (calculated)
13392.7 Da
IEP (calculated)
9.658
GRAVY (calculated)
-1.080
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSEGRHQGV VRTGMIHPRG FNPRHTNRLD SPPVFGDFTK MQPKTTNHSN IIGESERSKY SNCHVSPAIK SGHKSKGRRK LQPTSWWSED KLDRLIGSDS
101: SSAKDILDML CSEDHDEY
101: SSAKDILDML CSEDHDEY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.