Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004645.1-P | Field mustard | nucleus | 99.23 | 99.23 |
| CDY23827 | Canola | nucleus, plastid | 89.23 | 89.23 |
| CDY23829 | Canola | mitochondrion | 80.0 | 80.0 |
| CDX79919 | Canola | nucleus, plastid | 63.85 | 64.84 |
| AT2G41730.1 | Thale cress | mitochondrion | 59.23 | 64.71 |
| CDY23828 | Canola | nucleus, plastid | 64.62 | 64.62 |
| AT5G24640.1 | Thale cress | nucleus | 53.85 | 59.32 |
| GSMUA_Achr6P28310_001 | Banana | mitochondrion | 35.38 | 29.87 |
| CDY42559 | Canola | cytosol | 43.85 | 26.76 |
| CDY36373 | Canola | cytosol, mitochondrion, nucleus, plastid | 43.08 | 26.29 |
Protein Annotations
| EnsemblPlants:CDX79918 | EnsemblPlantsGene:GSBRNA2T00132774001 | PANTHER:PTHR34278 | PANTHER:PTHR34278:SF1 | ProteinID:CDX79918 | ProteinID:CDX79918.1 |
| SEG:seg | UniParc:UPI0004EEF399 | MapMan:35.2 | : | : | : |
Description
BnaA05g02380D
Coordinates
chrLK031819:-:832003..832395
Molecular Weight (calculated)
14490.8 Da
IEP (calculated)
8.276
GRAVY (calculated)
-1.137
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKEGHQHGF VRTGMIHPPG FSPRPSNQFM NRLDSPPASG EHTKVPSKPT HHSKFTGKHE RSKYSNCHVL PAMKSADTSK GRQKLKSTDW WVDDKLDRLT
101: GWGASSARDI LDTIGGEGYG GHDYDDDDDC
101: GWGASSARDI LDTIGGEGYG GHDYDDDDDC
001: MKSEGRHQGI VRTGMIHPRG FNPRPTSNRL DSPPAFGDFT KVPSKTTNHS NTTGESERSK YSHCHVSPAI KSGHKSKGRR KLQPTSWWSE DKLDRLIGSD
101: SSSAKDILDT LCGEDHDEH
101: SSSAKDILDT LCGEDHDEH
Arabidopsis Description
Calcium-binding site protein [Source:UniProtKB/TrEMBL;Acc:O22947]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.