Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79918 | Canola | nucleus | 89.23 | 89.23 |
| CDY23829 | Canola | mitochondrion | 79.23 | 79.23 |
| CDX79919 | Canola | nucleus, plastid | 63.08 | 64.06 |
| CDY23828 | Canola | nucleus, plastid | 63.85 | 63.85 |
| AT2G41730.1 | Thale cress | mitochondrion | 57.69 | 63.03 |
| AT5G24640.1 | Thale cress | nucleus | 53.08 | 58.47 |
| GSMUA_Achr6P28310_001 | Banana | mitochondrion | 36.92 | 31.17 |
| CDY42559 | Canola | cytosol | 43.85 | 26.76 |
| CDY36373 | Canola | cytosol, mitochondrion, nucleus, plastid | 43.08 | 26.29 |
Protein Annotations
| EnsemblPlants:CDY23827 | EnsemblPlantsGene:GSBRNA2T00024239001 | PANTHER:PTHR34278 | PANTHER:PTHR34278:SF1 | ProteinID:CDY23827 | ProteinID:CDY23827.1 |
| SEG:seg | UniParc:UPI0004EC9A6C | UniProt:A0A078GFC2 | MapMan:35.2 | : | : |
Description
BnaC04g02100DBnaC04g02100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFC2]
Coordinates
chrLK032150:-:24101..24493
Molecular Weight (calculated)
14328.4 Da
IEP (calculated)
8.242
GRAVY (calculated)
-1.190
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKEGRQHGF VRTGMIHPPG FSPRPSNQFV NRLDSPPGSG ESTKVPSKPT KHSKFTGKNE RSKYTNCHVS PAMKSADTSK GRQKLKSTDW WVDDQLDRLT
101: GSGASSARDI LDTIGGEDYG GHDYDDDDDC
101: GSGASSARDI LDTIGGEDYG GHDYDDDDDC
001: MKSEGRHQGI VRTGMIHPRG FNPRPTSNRL DSPPAFGDFT KVPSKTTNHS NTTGESERSK YSHCHVSPAI KSGHKSKGRR KLQPTSWWSE DKLDRLIGSD
101: SSSAKDILDT LCGEDHDEH
101: SSSAKDILDT LCGEDHDEH
Arabidopsis Description
Calcium-binding site protein [Source:UniProtKB/TrEMBL;Acc:O22947]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.