Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- mitochondrion 5
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41730.1 | GSMUA_Achr10P... | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr11P... | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr1P23220_001 | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr3P21090_001 | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr4P03680_001 | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr4P13650_001 | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr6P09870_001 | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr8P18270_001 | AT1G68670.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr4P00500_001 | AT3G47620.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr6P02720_001 | AT3G47620.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr7P17990_001 | AT3G47620.1 | 21798944 |
| AT2G41730.1 | GSMUA_Achr7P20990_001 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23827 | Canola | nucleus, plastid | 31.17 | 36.92 |
| CDY23829 | Canola | mitochondrion | 30.52 | 36.15 |
| Bra004645.1-P | Field mustard | nucleus | 29.87 | 35.38 |
| CDX79918 | Canola | nucleus | 29.87 | 35.38 |
| Bra004644.1-P | Field mustard | nucleus, plastid | 28.57 | 34.38 |
| CDX79919 | Canola | nucleus, plastid | 28.57 | 34.38 |
| AT2G41730.1 | Thale cress | mitochondrion | 25.32 | 32.77 |
| CDY23828 | Canola | nucleus, plastid | 27.27 | 32.31 |
| AT5G24640.1 | Thale cress | nucleus | 23.38 | 30.51 |
| GSMUA_Achr6P28320_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 37.66 | 28.29 |
| GSMUA_Achr3P17090_001 | Banana | cytosol | 33.77 | 25.49 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P28310_001 | EnsemblPlants:GSMUA_Achr6T28310_001 | EnsemblPlantsGene:GSMUA_Achr6G28310_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | PANTHER:PTHR34278 | PANTHER:PTHR34278:SF1 | SEG:seg | UniParc:UPI000296A61F |
| UniProt:M0TAX6 | MapMan:35.2 | : | : | : | : |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G28310_001]
Coordinates
chr6:+:28689951..28690415
Molecular Weight (calculated)
16648.7 Da
IEP (calculated)
8.909
GRAVY (calculated)
-0.750
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MRREGRQHGL VRTHILLPPP LQSRHRPRPL HQLHAPPTAG VFSKVPSKPT NHSKFTGRCG GGKPMCTACH AKPAWKSKGK AKGSSKLRDG LAIRRGASAT
101: EAVGVLMDGI DEDDWFGGDD GMKHEALAGE ETSLSQTDYA SGDGDWFLVG EEEQ
101: EAVGVLMDGI DEDDWFGGDD GMKHEALAGE ETSLSQTDYA SGDGDWFLVG EEEQ
001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
Arabidopsis Description
At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.