Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr6P28320_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 56.86 | 56.59 |
KRG88946 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 21.57 | 45.36 |
PGSC0003DMT400017820 | Potato | cytosol | 26.47 | 43.55 |
Solyc02g067940.1.1 | Tomato | cytosol, plastid | 19.12 | 40.62 |
Zm00001d036468_P001 | Maize | nucleus | 38.73 | 36.92 |
Zm00001d036465_P001 | Maize | nucleus | 38.73 | 36.92 |
KRH72087 | Soybean | plastid | 30.39 | 36.69 |
Solyc02g093710.1.1 | Tomato | mitochondrion | 33.33 | 35.6 |
GSMUA_Achr6P28310_001 | Banana | mitochondrion | 25.49 | 33.77 |
AT5G40690.1 | Thale cress | plastid | 34.31 | 33.33 |
PGSC0003DMT400032865 | Potato | cytosol | 31.37 | 33.33 |
CDY36373 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.31 | 32.86 |
VIT_14s0219g00110.t01 | Wine grape | nucleus | 34.31 | 32.11 |
EER90325 | Sorghum | cytosol, mitochondrion | 37.75 | 31.95 |
CDY42559 | Canola | cytosol | 33.33 | 31.92 |
TraesCSU01G053700.1 | Wheat | mitochondrion | 36.76 | 31.38 |
TraesCS3D01G524000.1 | Wheat | mitochondrion | 36.27 | 31.22 |
TraesCS3A01G516300.1 | Wheat | mitochondrion | 35.78 | 30.67 |
Bra025553.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 33.82 | 30.53 |
HORVU4Hr1G000630.1 | Barley | mitochondrion | 18.63 | 24.84 |
HORVU3Hr1G113050.1 | Barley | cytosol, mitochondrion, nucleus | 36.27 | 20.27 |
HORVU5Hr1G017320.1 | Barley | plastid | 15.2 | 17.22 |
HORVU0Hr1G018980.1 | Barley | cytosol, mitochondrion | 12.25 | 12.82 |
HORVU2Hr1G123290.3 | Barley | extracellular | 13.73 | 11.76 |
HORVU5Hr1G072670.2 | Barley | cytosol | 9.31 | 9.74 |
Protein Annotations
EnsemblPlants:GSMUA_Achr3P17090_001 | EnsemblPlants:GSMUA_Achr3T17090_001 | EnsemblPlantsGene:GSMUA_Achr3G17090_001 | PANTHER:PTHR34278 | PANTHER:PTHR34278:SF1 | UniParc:UPI00029689B6 |
UniProt:M0SFC5 | MapMan:35.2 | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G17090_001]
Coordinates
chr3:-:18318700..18321357
Molecular Weight (calculated)
22719.5 Da
IEP (calculated)
6.389
GRAVY (calculated)
-0.680
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREGRQHGI VRSSTILPQE FNPTRKSKIV DCVGASPTTR FFTKAPSKPH NHSKCTSKCR TARCKGCHSN PMSKSRDKAK GAYKLKSCDV VLNHQLVAWR
101: VVNNSTSLPN YKVASASETL NHLYADSLCE GEDYDNHNME ENLDYGYGEV SPETIDLEVG CKGAKVEEVE PFSPDSDEAG DMNFYVVGMS WDYSDGEWLV
201: VGEI
101: VVNNSTSLPN YKVASASETL NHLYADSLCE GEDYDNHNME ENLDYGYGEV SPETIDLEVG CKGAKVEEVE PFSPDSDEAG DMNFYVVGMS WDYSDGEWLV
201: VGEI
001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
Arabidopsis Description
At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.