Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036465_P001 | Maize | nucleus | 100.0 | 100.0 |
| EER90325 | Sorghum | cytosol, mitochondrion | 63.08 | 56.02 |
| TraesCS3A01G516300.1 | Wheat | mitochondrion | 54.21 | 48.74 |
| TraesCSU01G053700.1 | Wheat | mitochondrion | 54.21 | 48.54 |
| TraesCS3D01G524000.1 | Wheat | mitochondrion | 53.74 | 48.52 |
| GSMUA_Achr6P28320_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 39.25 | 40.98 |
| HORVU4Hr1G000630.1 | Barley | mitochondrion | 28.04 | 39.22 |
| GSMUA_Achr3P17090_001 | Banana | cytosol | 36.92 | 38.73 |
| PGSC0003DMT400017820 | Potato | cytosol | 22.43 | 38.71 |
| Solyc02g093710.1.1 | Tomato | mitochondrion | 29.91 | 33.51 |
| PGSC0003DMT400032865 | Potato | cytosol | 28.97 | 32.29 |
| Solyc02g067940.1.1 | Tomato | cytosol, plastid | 14.49 | 32.29 |
| KRG88946 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 14.49 | 31.96 |
| KRH72087 | Soybean | plastid | 23.36 | 29.59 |
| VIT_14s0219g00110.t01 | Wine grape | nucleus | 28.04 | 27.52 |
| CDY36373 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.1 | 27.23 |
| AT5G40690.1 | Thale cress | plastid | 25.7 | 26.19 |
| CDY42559 | Canola | cytosol | 25.23 | 25.35 |
| Bra025553.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 26.17 | 24.78 |
| HORVU5Hr1G017320.1 | Barley | plastid | 20.56 | 24.44 |
| HORVU0Hr1G018980.1 | Barley | cytosol, mitochondrion | 19.63 | 21.54 |
| HORVU2Hr1G123290.3 | Barley | extracellular | 22.9 | 20.59 |
| HORVU5Hr1G072670.2 | Barley | cytosol | 16.36 | 17.95 |
Protein Annotations
| EnsemblPlants:Zm00001d036468_P001 | EnsemblPlants:Zm00001d036468_T001 | EnsemblPlantsGene:Zm00001d036468 | EntrezGene:100277347 | PANTHER:PTHR34278 | PANTHER:PTHR34278:SF1 |
| ProteinID:AQK81111.1 | ProteinID:AQK81113.1 | SEG:seg | UniParc:UPI0002220F57 | UniProt:A0A1D6LNJ8 | MapMan:35.2 |
Description
No Description!
Coordinates
chr6:+:89400862..89401506
Molecular Weight (calculated)
22797.0 Da
IEP (calculated)
4.304
GRAVY (calculated)
-0.613
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDGWQHGA VRGSRSKVLR TAAGDDNSDA DAVVETAAAA ARKPTNASRS TGKCRRARCA GCHAHPVSKA RDKAKGARKL RACDVALNHR LVSWRVVDQG
101: PGYSGASASS LLAYLAGGSS WHEEEEDDDE GGAAPDGRLS DLYDLFVGRG QEEDGVDAVG EIQAVEEQGL LDAKDGEEEE VEDDGDDMGF CMVGTTIALE
201: FSDGEEDWIV VEEI
101: PGYSGASASS LLAYLAGGSS WHEEEEDDDE GGAAPDGRLS DLYDLFVGRG QEEDGVDAVG EIQAVEEQGL LDAKDGEEEE VEDDGDDMGF CMVGTTIALE
201: FSDGEEDWIV VEEI
001: MKREGKQHGM VRTYRILPPS LNPRPESKLV NPLTSRPTAG LFTKVTSKPT NHSKFTGKCG QARCLDCHMH PVTKSKAKTK GSSKVRTNDV TYKMLTWQVA
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
101: AGGPRPGLKL SGFSATGILD LMSDDYGYDH DYDYDEENEE EENRGSVVEE VVNIQSSDDG GETEEEGSND DDDDTDDDGR MSFCDVGMMM MMDHVEEYDE
201: GWYLVEEMMT
Arabidopsis Description
At5g40690 [Source:UniProtKB/TrEMBL;Acc:Q9FM29]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.