Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G000630.1 | Barley | mitochondrion | 50.0 | 58.82 |
| HORVU0Hr1G018980.1 | Barley | cytosol, mitochondrion | 49.44 | 45.64 |
| HORVU5Hr1G072670.2 | Barley | cytosol | 46.11 | 42.56 |
| HORVU2Hr1G123290.3 | Barley | extracellular | 50.0 | 37.82 |
| HORVU3Hr1G113050.1 | Barley | cytosol, mitochondrion, nucleus | 56.67 | 27.95 |
| Zm00001d036468_P001 | Maize | nucleus | 24.44 | 20.56 |
| Zm00001d036465_P001 | Maize | nucleus | 24.44 | 20.56 |
| EER90325 | Sorghum | cytosol, mitochondrion | 25.0 | 18.67 |
| VIT_14s0219g00110.t01 | Wine grape | nucleus | 21.11 | 17.43 |
| PGSC0003DMT400017820 | Potato | cytosol | 10.56 | 15.32 |
| GSMUA_Achr3P17090_001 | Banana | cytosol | 17.22 | 15.2 |
| Solyc02g093710.1.1 | Tomato | mitochondrion | 16.11 | 15.18 |
| PGSC0003DMT400032865 | Potato | cytosol | 15.56 | 14.58 |
| Solyc02g067940.1.1 | Tomato | cytosol, plastid | 7.78 | 14.58 |
| GSMUA_Achr6P28320_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 15.56 | 13.66 |
| AT5G40690.1 | Thale cress | plastid | 15.56 | 13.33 |
| Bra025553.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 16.11 | 12.83 |
| KRH72087 | Soybean | plastid | 11.67 | 12.43 |
| CDY36373 | Canola | cytosol, mitochondrion, nucleus, plastid | 14.44 | 12.21 |
| CDY42559 | Canola | cytosol | 13.33 | 11.27 |
| KRG88946 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 5.56 | 10.31 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G017320.1 | EnsemblPlantsGene:HORVU5Hr1G017320 | SEG:seg | UniParc:UPI000B47FE37 | UniProt:A0A287QH47 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr5H:-:66896470..66897260
Molecular Weight (calculated)
19316.1 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.794
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: NGLSRGGAVR RVPPAPVRRR RHHQGAGQGQ GRTQVARRRR RPQPPPRLLA RRQRRRATAT GGYNYRGASA SGVLAHLADG NSSHAEVEEE DDADLEVAAP
101: RGISDMYGLI IGLQAAPGGQ EDDPDGTAAA ADTDKIEDQD AEITEDVDED EGDNNAGFCV VRGITIALEF SDGEEEWIVV
101: RGISDMYGLI IGLQAAPGGQ EDDPDGTAAA ADTDKIEDQD AEITEDVDED EGDNNAGFCV VRGITIALEF SDGEEEWIVV
001: MDSAIDISSD SDVEIQETRT RPQHPPRIAE GSHRRDLSTL RPHFLSGSSS GANGHTKTGL TNLDSRNGFE SKPLPRAEHH THIPGNGSIV TSRIPNISVG
101: DYEKFSSQQA FKRTHPPTFS RPPFPPRPDI GTSNGNASHF RGGAHDDLGM GRVTNGTRIL PPSVAHGTSA SPSHFNGLSD PMHRNGIGEE RNSENDERLI
201: YQAALQELNQ PKSEVDLPAG LLSVPLMKHQ KIALAWMFQK ETNSLHCMGG ILADDQGLGK TVSTIALILK QMHEAKLKSK NSGNQEAEAL DLDADDESEN
301: AFEKPESKAS NGSGVNGDSG IKKAKGEEAS TSTRKFNRKR PAAGTLIVCP ASVVRQWARE LDEKVTDEAK LSVLIYHGGN RTKDPIELAK YDVVMTTYAI
401: VSNEVPKQPL VDDDENDEKN SEKYGLASGF SINKKRKNVV GTTKKSKKKK GNNNAGDSSD PDSGTLAKVG WFRVVLDEAQ TIKNHRTQVA RACCGLRAKR
501: RWCLSGTPIQ NTIDDLYSYF RFLKYDPYAV YKSFCHQIKG PISRNSLQGY KKLQAVLRAI MLRRTKGTLL DGQPIINLPP KTINLSQVDF SVEERSFYVK
601: LESDSRSQFK AYAAAGTLNQ NYANILLMLL RLRQACDHPQ LVKRYNSDSV GKVSEEAVKK LPKEDLVSLL SRLESSPICC VCHDPPEDPV VTLCGHIFCY
701: QCVSDYITGD EDTCPAPRCR EQLAHDVVFS KSTLRSCVAD DLGCSSSEDN SHDKSVFQNG EFSSSKIKAV LDILQSLSNQ GTSNSTQNGQ MASSSQQPND
801: DDDDDDDDVT IVEKTSLKST PSNGGPIKTI IFSQWTGMLD LVELSLIENS IEFRRLDGTM SLIARDRAVK EFSNDPDVKV MIMSLKAGNL GLNMIAACHV
901: ILLDLWWNPT TEDQAIDRAH RIGQTRPVTV TRITIKNTVE DRILALQEEK RKMVASAFGE DHGGSSATRL TVDDLKYLFM V
101: DYEKFSSQQA FKRTHPPTFS RPPFPPRPDI GTSNGNASHF RGGAHDDLGM GRVTNGTRIL PPSVAHGTSA SPSHFNGLSD PMHRNGIGEE RNSENDERLI
201: YQAALQELNQ PKSEVDLPAG LLSVPLMKHQ KIALAWMFQK ETNSLHCMGG ILADDQGLGK TVSTIALILK QMHEAKLKSK NSGNQEAEAL DLDADDESEN
301: AFEKPESKAS NGSGVNGDSG IKKAKGEEAS TSTRKFNRKR PAAGTLIVCP ASVVRQWARE LDEKVTDEAK LSVLIYHGGN RTKDPIELAK YDVVMTTYAI
401: VSNEVPKQPL VDDDENDEKN SEKYGLASGF SINKKRKNVV GTTKKSKKKK GNNNAGDSSD PDSGTLAKVG WFRVVLDEAQ TIKNHRTQVA RACCGLRAKR
501: RWCLSGTPIQ NTIDDLYSYF RFLKYDPYAV YKSFCHQIKG PISRNSLQGY KKLQAVLRAI MLRRTKGTLL DGQPIINLPP KTINLSQVDF SVEERSFYVK
601: LESDSRSQFK AYAAAGTLNQ NYANILLMLL RLRQACDHPQ LVKRYNSDSV GKVSEEAVKK LPKEDLVSLL SRLESSPICC VCHDPPEDPV VTLCGHIFCY
701: QCVSDYITGD EDTCPAPRCR EQLAHDVVFS KSTLRSCVAD DLGCSSSEDN SHDKSVFQNG EFSSSKIKAV LDILQSLSNQ GTSNSTQNGQ MASSSQQPND
801: DDDDDDDDVT IVEKTSLKST PSNGGPIKTI IFSQWTGMLD LVELSLIENS IEFRRLDGTM SLIARDRAVK EFSNDPDVKV MIMSLKAGNL GLNMIAACHV
901: ILLDLWWNPT TEDQAIDRAH RIGQTRPVTV TRITIKNTVE DRILALQEEK RKMVASAFGE DHGGSSATRL TVDDLKYLFM V
Arabidopsis Description
CHR28Helicase-like transcription factor CHR28 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.