Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99108 | Soybean | nucleus | 79.72 | 83.52 |
| KRH49755 | Soybean | nucleus | 27.97 | 40.4 |
| Bra004407.1-P | Field mustard | nucleus, plastid | 43.01 | 38.32 |
| CDY68276 | Canola | nucleus, plastid | 43.01 | 38.32 |
| CDY01754 | Canola | nucleus, plastid | 43.01 | 38.08 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 43.01 | 37.85 |
| CDY28576 | Canola | nucleus | 41.96 | 37.74 |
| Bra003986.1-P | Field mustard | cytosol | 32.17 | 37.55 |
| KRH30615 | Soybean | cytosol | 20.28 | 37.18 |
| CDY28577 | Canola | cytosol | 31.47 | 37.04 |
| Bra007875.1-P | Field mustard | cytosol | 31.47 | 36.59 |
| KRH32533 | Soybean | plastid | 23.08 | 34.74 |
| KRH19921 | Soybean | plastid | 22.38 | 34.59 |
| KRH36141 | Soybean | nucleus | 28.67 | 33.33 |
| KRH74835 | Soybean | nucleus | 44.76 | 33.25 |
| KRG90619 | Soybean | nucleus | 27.97 | 33.06 |
| KRH70699 | Soybean | nucleus | 47.9 | 32.31 |
| KRG89108 | Soybean | nucleus, plastid | 25.87 | 31.9 |
| KRH63357 | Soybean | nucleus | 42.66 | 30.65 |
| KRH56919 | Soybean | nucleus | 44.06 | 30.29 |
| KRH54542 | Soybean | nucleus | 43.01 | 30.15 |
| KRH03466 | Soybean | nucleus | 43.36 | 30.02 |
| KRH40904 | Soybean | nucleus | 24.83 | 29.71 |
| KRH40902 | Soybean | nucleus | 24.83 | 29.58 |
| KRH06094 | Soybean | plastid | 35.66 | 28.25 |
| KRH35393 | Soybean | nucleus | 29.37 | 27.01 |
| KRG91429 | Soybean | nucleus | 30.07 | 26.38 |
| KRG94577 | Soybean | nucleus | 30.42 | 26.36 |
| KRH06910 | Soybean | nucleus | 30.77 | 25.51 |
| KRH57263 | Soybean | nucleus | 30.42 | 25.14 |
| KRH48289 | Soybean | nucleus | 29.02 | 24.78 |
| KRH03994 | Soybean | nucleus | 29.37 | 24.71 |
| KRH65181 | Soybean | nucleus | 28.32 | 24.11 |
| KRH26343 | Soybean | nucleus, plastid | 36.01 | 23.73 |
Protein Annotations
| EntrezGene:102664835 | MapMan:15.5.19 | EMBL:ACUP02005294 | EnsemblPlantsGene:GLYMA_08G299400 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | UniProt:K7L9T0 | ProteinID:KRH45888.1 | EnsemblPlants:KRH45889 | ProteinID:KRH45889 |
| ProteinID:KRH45889.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF72 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI00023CA6C3 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:41742211..41745739
Molecular Weight (calculated)
31255.4 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.578
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEECVHQQN VAGNKSNFPL QLLKKKDEGP PPSPPPSAAK AKRPPTKDRH TKVEGRGRRI RMPAACAARV FQLTRELGHK SDGETIEWLL REAEPAVIAA
101: TGTGTIPANF TSLNISLRSS GSSLSSPSHY FLNRRNNLYN HNNHPFVTTT PIFSSSESCF KSYPSFSFAE DSKRSSFSDS SFANNYYSRK RRHEVISHVG
201: SCCSSQMCTD SVPAMMGGAD SVWAIPSVAS SSASGIPFMN FASLLTGQHV GGATLSSETN FNVLATLNAY SGQQHQHRHE GEETHY
101: TGTGTIPANF TSLNISLRSS GSSLSSPSHY FLNRRNNLYN HNNHPFVTTT PIFSSSESCF KSYPSFSFAE DSKRSSFSDS SFANNYYSRK RRHEVISHVG
201: SCCSSQMCTD SVPAMMGGAD SVWAIPSVAS SSASGIPFMN FASLLTGQHV GGATLSSETN FNVLATLNAY SGQQHQHRHE GEETHY
001: MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ
101: QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK
201: PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL
301: FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P
101: QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK
201: PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL
301: FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P
Arabidopsis Description
TCP23Transcription factor TCP23 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQF0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.