Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24900.1 | KRG97189 | AT3G61790.1 | 21798944 |
| AT4G24900.1 | KRH68916 | AT3G61790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 49.62 | 47.13 |
| CDY34322 | Canola | nucleus | 41.56 | 42.64 |
| CDY03408 | Canola | nucleus | 40.81 | 41.97 |
| Bra013844.1-P | Field mustard | nucleus | 41.81 | 41.29 |
| AT4G24900.1 | Thale cress | nucleus | 43.32 | 40.86 |
| Solyc03g098330.2.1 | Tomato | nucleus | 40.3 | 38.37 |
| PGSC0003DMT400065842 | Potato | nucleus | 39.8 | 38.16 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 22.67 | 34.75 |
| TraesCS5D01G294200.2 | Wheat | nucleus | 36.02 | 33.81 |
| TraesCS5A01G286600.1 | Wheat | nucleus | 35.52 | 33.18 |
| OQU89749 | Sorghum | nucleus | 26.2 | 32.6 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 35.52 | 32.34 |
| Zm00001d006090_P002 | Maize | nucleus | 33.0 | 30.05 |
| TraesCS5B01G285900.2 | Wheat | nucleus | 20.4 | 29.45 |
| Os09t0506900-01 | Rice | nucleus | 21.16 | 27.01 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 16.37 | 22.18 |
Protein Annotations
| EMBL:ACUP02003506 | EnsemblPlants:KRH54182 | EnsemblPlantsGene:GLYMA_06G170000 | EntrezGene:100799252 | InterPro:CCDC84 | PANTHER:PTHR31198 |
| PFAM:PF14968 | ProteinID:KRH54182 | ProteinID:KRH54182.1 | SEG:seg | UniParc:UPI0006EDAE45 | UniProt:A0A0R0JI79 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:14193284..14197157
Molecular Weight (calculated)
45527.5 Da
IEP (calculated)
10.119
GRAVY (calculated)
-0.705
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEQHENENG RTGTKNQHQQ KKKKKKSEFE FCKACNINHD QGLRHKYFPN HKKSLSTFLS RFRKKLSDVR FFLNAPIPLN PQLASRNRFW CVFCDQHIDE
101: LNSSFACANA IRHLASAEHV KNLKQFFWKY GGAADQLDAF MVSDDDVDKW EKKCTARKDE ASEGSRRTVI GPSSDEMSIR YLVQDSPELP LVLPLQKFAL
201: VQIIFLCKIL QLDVVAFLSL MMVDNGQVMV TPVIKRTHWL VNSLVRENGR MVSGESSHQG VQMVTQISTG SAGGKVFSEE PPPWLGTTDE VQMRSSNKLG
301: KSKKLNSKRV GAAWVEKRKI EMEKERRGES IRNECDSNWL PNFGRVWQSG SRRESRKEFE REKQKLNVET QSEMAIKIKP YVSKRMRMDS GGDYASG
101: LNSSFACANA IRHLASAEHV KNLKQFFWKY GGAADQLDAF MVSDDDVDKW EKKCTARKDE ASEGSRRTVI GPSSDEMSIR YLVQDSPELP LVLPLQKFAL
201: VQIIFLCKIL QLDVVAFLSL MMVDNGQVMV TPVIKRTHWL VNSLVRENGR MVSGESSHQG VQMVTQISTG SAGGKVFSEE PPPWLGTTDE VQMRSSNKLG
301: KSKKLNSKRV GAAWVEKRKI EMEKERRGES IRNECDSNWL PNFGRVWQSG SRRESRKEFE REKQKLNVET QSEMAIKIKP YVSKRMRMDS GGDYASG
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.