Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- endoplasmic reticulum 1
- cytosol 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P06970_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24900.1 | GSMUA_Achr5P06970_001 | AT3G61790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G285900.2 | Wheat | nucleus | 42.08 | 39.64 |
| Os09t0506900-01 | Rice | nucleus | 42.08 | 35.05 |
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 49.42 | 30.62 |
| TraesCS5A01G286600.1 | Wheat | nucleus | 45.95 | 28.0 |
| TraesCS5D01G294200.2 | Wheat | nucleus | 45.56 | 27.9 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 45.95 | 27.29 |
| CDY03408 | Canola | nucleus | 40.15 | 26.94 |
| CDY34322 | Canola | nucleus | 39.0 | 26.1 |
| PGSC0003DMT400065842 | Potato | nucleus | 41.7 | 26.09 |
| AT4G24900.1 | Thale cress | nucleus | 42.08 | 25.89 |
| Bra013844.1-P | Field mustard | nucleus | 39.77 | 25.62 |
| Solyc03g098330.2.1 | Tomato | nucleus | 40.93 | 25.42 |
| Zm00001d006090_P002 | Maize | nucleus | 41.7 | 24.77 |
| KRH54182 | Soybean | cytosol | 34.75 | 22.67 |
| OQU89749 | Sorghum | nucleus | 25.87 | 21.0 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 20.46 | 18.09 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P17850_001 | EnsemblPlants:GSMUA_Achr8T17850_001 | EnsemblPlantsGene:GSMUA_Achr8G17850_001 | InterPro:CCDC84 | PANTHER:PTHR31198 | PFAM:PF14968 |
| UniParc:UPI000294D050 | UniProt:M0TRD8 | MapMan:35.1 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G17850_001]
Coordinates
chr8:+:19103764..19106550
Molecular Weight (calculated)
28693.5 Da
IEP (calculated)
7.342
GRAVY (calculated)
-0.435
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSSGENGQ DFEFCEVCRL NHDQGRRHKY FPSHARALAA VLARFHGKLS DIRFFLRNPS SLSPEHAVLN HLWCLFCRCD LRELGSSFAC SNTIKHLASS
101: EHLRNLKEFL RKHGGGMDRV DSFRVSEAEL LKWEKGCETL NNATTSSCER SIGPSTGSSK DIQYALTSSD MDNFEKNSIN SFVSNASHSV MPLQCPTNEN
201: YDNQHDPAVS GSTIGGFIPH IATSWSVDIQ GNIGLPGTYV FGSVSRHLSG RPSVVFEGY
101: EHLRNLKEFL RKHGGGMDRV DSFRVSEAEL LKWEKGCETL NNATTSSCER SIGPSTGSSK DIQYALTSSD MDNFEKNSIN SFVSNASHSV MPLQCPTNEN
201: YDNQHDPAVS GSTIGGFIPH IATSWSVDIQ GNIGLPGTYV FGSVSRHLSG RPSVVFEGY
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQENYQVSQD KKQIDGSYNP PGVVGMTSIS SSHSTDAGGN VHSGAPPPWL
301: DANDGDFSSV QLNQSDVARF QAKVPGKNRK LNPNRVGAAW AERRKIEIEM EKSGHVTKSN IDPDWLPNFG RVWQSGTRKE SRKEFEKEKR KLVKTESIST
401: ESEPVKIQPY ISKRARRESG E
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQENYQVSQD KKQIDGSYNP PGVVGMTSIS SSHSTDAGGN VHSGAPPPWL
301: DANDGDFSSV QLNQSDVARF QAKVPGKNRK LNPNRVGAAW AERRKIEIEM EKSGHVTKSN IDPDWLPNFG RVWQSGTRKE SRKEFEKEKR KLVKTESIST
401: ESEPVKIQPY ISKRARRESG E
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.